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Report for CCDS29193.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29193.1 Public Mus musculus 18 Pcdhgc4 23 108 98 CCDS HistoryNCBI Gene:93707Re-query CCDS DB by CCDS ID:29193.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29193.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066140.12 ENSMUSP00000068846.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066140.12Link to Ensembl Protein Viewer:ENSMUSP00000068846.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000066140Re-query CCDS DB by Protein ID:ENSMUSP00000068846
Original member Current member NCBI NM_033582.2 NP_291060.1 Accepted alive Link to Nucleotide Sequence:NM_033582.2Link to Protein Sequence:NP_291060.1Re-query CCDS DB by Nucleotide ID:NM_033582Re-query CCDS DB by Protein ID:NP_291060Link to BLAST:NP_291060.1

Chromosomal Locations for CCDS 29193.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 37815533 37817983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37825021 37825079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37833265 37833353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 37839903 37840129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2826 nt):
ATGGCAGCAATGCCCAGCACGGTGAGAAGCTGGGTAGAAATTTGGTGGGGGGCTACCCTTTTGTTCCTCT
TTTGCCACCTGGGCTACGTTTATGGGCAGATTCGCTACCCGGTCCCAGAGGAGTCACAGGAAGGGACTTT
TGTAGGGAATGTCGCCCAAGATTTTTTGCTGGATACAGAGAGTCTATCCGCTCGCAGGCTGCAGGTCGCT
GGAGAGGTGAACCAAAGACACTTCCGTGTGGATTTGGACAGCGGAGCCCTGCTCATCAAAAATCCAATCG
ATCGAGAGGCACTGTGTGGGCTCAGTGCCAGCTGCATCGTGCCCCTGGAGTTTGTAACCGAAGGGCCTTT
GGAAATGTACCGAGCGGAGGTTGAGATCGTAGATGTGAATGATCACGCCCCCCGATTTCCGCGGCAGCAG
TTGGACTTGGAAATCGGGGAAGCAGCTCCGCCAGGACAGCGTTTCCCCTTGGAAAAGGCTCAGGATGCAG
ATGTTGGGAGCAATTCCATTAGCAGCTACAGACTAAGCTCCAATGAGCACTTTGCCCTGGATGTCAAGAA
GCGCAGCGACGGCAGCCTGGTCCCAGAGCTTCTTCTGGAGAAGCCCTTGGATCGTGAGAAGCAATCCGAC
TACCGCCTGGTGCTGACTGCTGTAGATGGAGGGAACCCCCCTAGATCTGGAACCGCAGAGCTCCGGGTGT
CAGTGCTGGATGTGAATGACAACGCCCCAGCCTTCCAGCAATCCAGTTACAGGATCAGCGTGTTGGAGAG
CGCGCCAGCGGGCATGGTGCTCATCCAGCTCAATGCCTCTGACCCAGACCTGGGACCTAGTGGTAACGTC
ACCTTTTCTTTTAGTGGTCACACCCCTGACCGTGTGAGAAACCTCTTTAGCCTTCATCCCACTACTGGAA
AGCTTACCCTTCAGGGGCCTCTAGACTTTGAGAGTGAGAATTATTACGAATTTGATGTAAGGGCTCGTGA
TGGGGGTTCTCCAGCTATGGAGCAACACTGCAGCCTTAGGGTGGATCTTCTAGATGTGAACGACAACGCC
CCCCATATCACAGTGACCTCTGAGCTTGGAACTCTACCAGAGAGTGCAGAACCTGGCACTGTGGTAGCAC
TAATCAGTGTGCAGGACCCTGACTCGGGGTCAAATGGGGATGTGAGCCTACGGATTCCCGACCACTTACC
ATTTGCCCTCAAGTCTGCCTTCAGGAACCAGTTCTCCCTCGTGACAGCAGGACCCTTGGACCGAGAGGCC
AGATCCAGTTACGACATCATGGTTACCGCTTCTGATGCTGGGAACCCTCCGCTGAGCACCCACAGGACGA
TTTTCCTCAATATCTCAGATGTGAATGATAACCCACCCTCATTCTTTCAGAGGTCGCATGAGGTGTTTGT
TCCTGAGAACAATCGCCCAGGGGACCTGCTTTGCTCCCTTGCAGCCTCTGACCCAGACTCTGGCTTAAAC
GCGTTAATCTCATACTCTCTCTTAGAGCCCAGAAACCGAGACGTATCGGCTTCTTCCTTCATCTCTCTGA
ACCCCCAGACAGGGGCCGTTCATGCTACTAGATCATTTGACTATGAACAAACACAGACACTGCAGTTTGA
GGTGCAGGCCAGGGACAGGGGCAGCCCACCTCTCAGCAGCACTGTGACAGTGCGCCTGTTTGTTCTAGAC
CTCAATGACAATGCCCCAGCAGTGCTACGCCCCAGGGCCAGGCCTGGTTCCTTATGTCCCCAGGCGTTGC
CTCCATCAGTTGGCGCTGGTCACCTCGTCACAAAGGTGACGGCTGTGGACTTAGATTCAGGTTACAATGC
TTGGGTTTCCTATCAGCTCCTGGAGGCCCCAGATCCCAGCCTGTTTGCAGTCTCCCGTTATGCAGGGGAA
GTACGGACTGCTGTTCCCATCCCAGCTGACCTCCCACCGCAGAAGCTGGTCATAGTGGTGAAGGACAGTG
GTAGCCCACCACTCTCTACCTCTGTGACTCTCCTAGTGTCCTTAGAGGAAGACACTCATCCAGTTGTCCC
CGATCTTCGAGAATCTTCAGCTCCCAGGGAAGGAGAATCCCGCCTAACCCTCTACTTGGCTGTGTCCTTA
GTGGCGATCTGCTTTGTCTCCTTTGGTTCTTTTGTGGCACTGCTCTCTAAGTGTCTTCGTGGGGCTGCCT
GTGGAGTAACGTGCTTTCCTGCTGGCACCTGCGCCTGTCTCACCAGATCTCGGAGGAGGGAGGGGCTTCC
TCCTTCCAATGGGATCCTCCGAATCCAGCTAGGGTCAGAAGATCCTATCAAGTTTGTTGACGTGGGAGGC
CACTCTCATGGCTGTACACCATTGGCTTCTGCGCCTACTCGGAGTGATAGCTTCATGATGGTGAAGTCAC
CCAGTGCACCTATGGCTGGGGAGCCCGTGCGGCCAAGCTGTCCACCCTCTGATCTTCTCTATGGGCTAGA
GCAAGCCCCGCCCAACACTGACTGGCGTTTCTCTCAAGCCCAGAGACCCGGCACGAGCGGATCCCAAAAT
GGTGATGAAACTGGCACCTGGCCCAACAACCAGTTTGATACAGAGATGCTGCAAGCCATGATCTTGGCCT
CTGCCAGCGAAGCTGCTGATGGGAGCTCTACCCTGGGAGGGGGCGCTGGCACCATGGGTCTGAGCGCTCG
ATACGGACCCCAGTTTACCCTGCAGCACGTGCCTGACTACCGCCAGAACGTGTACATCCCTGGCAGCAAT
GCCACGCTGACCAATGCCGCTGGCAAACGAGATGGCAAGGCTCCAGCAGGTGGTAATGGCAACAAGAAGA
AATCGGGCAAGAAAGAGAAGAAGTAA

Translation (941 aa):
MAAMPSTVRSWVEIWWGATLLFLFCHLGYVYGQIRYPVPEESQEGTFVGNVAQDFLLDTESLSARRLQVA
GEVNQRHFRVDLDSGALLIKNPIDREALCGLSASCIVPLEFVTEGPLEMYRAEVEIVDVNDHAPRFPRQQ
LDLEIGEAAPPGQRFPLEKAQDADVGSNSISSYRLSSNEHFALDVKKRSDGSLVPELLLEKPLDREKQSD
YRLVLTAVDGGNPPRSGTAELRVSVLDVNDNAPAFQQSSYRISVLESAPAGMVLIQLNASDPDLGPSGNV
TFSFSGHTPDRVRNLFSLHPTTGKLTLQGPLDFESENYYEFDVRARDGGSPAMEQHCSLRVDLLDVNDNA
PHITVTSELGTLPESAEPGTVVALISVQDPDSGSNGDVSLRIPDHLPFALKSAFRNQFSLVTAGPLDREA
RSSYDIMVTASDAGNPPLSTHRTIFLNISDVNDNPPSFFQRSHEVFVPENNRPGDLLCSLAASDPDSGLN
ALISYSLLEPRNRDVSASSFISLNPQTGAVHATRSFDYEQTQTLQFEVQARDRGSPPLSSTVTVRLFVLD
LNDNAPAVLRPRARPGSLCPQALPPSVGAGHLVTKVTAVDLDSGYNAWVSYQLLEAPDPSLFAVSRYAGE
VRTAVPIPADLPPQKLVIVVKDSGSPPLSTSVTLLVSLEEDTHPVVPDLRESSAPREGESRLTLYLAVSL
VAICFVSFGSFVALLSKCLRGAACGVTCFPAGTCACLTRSRRREGLPPSNGILRIQLGSEDPIKFVDVGG
HSHGCTPLASAPTRSDSFMMVKSPSAPMAGEPVRPSCPPSDLLYGLEQAPPNTDWRFSQAQRPGTSGSQN
GDETGTWPNNQFDTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSN
ATLTNAAGKRDGKAPAGGNGNKKKSGKKEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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