NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS30369.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30369.1 Public Mus musculus X Pabpc5 23 108 98 CCDS HistoryNCBI Gene:93728Re-query CCDS DB by CCDS ID:30369.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30369.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040961.2 ENSMUSP00000047756.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040961.2Link to Ensembl Protein Viewer:ENSMUSP00000047756.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000040961Re-query CCDS DB by Protein ID:ENSMUSP00000047756
Original member Current member EBI ENSMUST00000113366.1 ENSMUSP00000108993.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113366.1Link to Ensembl Protein Viewer:ENSMUSP00000108993.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113366Re-query CCDS DB by Protein ID:ENSMUSP00000108993
Original member Current member NCBI NM_053114.2 NP_444344.1 Accepted alive Link to Nucleotide Sequence:NM_053114.2Link to Protein Sequence:NP_444344.1Re-query CCDS DB by Nucleotide ID:NM_053114Re-query CCDS DB by Protein ID:NP_444344Link to BLAST:NP_444344.1

Chromosomal Locations for CCDS 30369.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 119927990 119929135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1146 nt):
ATGAGTGGGGAGCCTAATACTGCTGGCAAGAAAAAGAAGTACCTCAAGGCTGCCCTGTATGTAGGTGACT
TGGACCCTGACGTCACAGAGGACATGCTCTATAAGAAGTTCAGACCTGCTGGCCCTCTGCGCTTCACTAG
AATCTGTCGTGACCCAGTGACCCGCAGCCCCCTGGGTTATGGTTATGTTAATTTCCGCTTTCCTGCAGAT
GCTGAATGGGCATTGAACACAATGAATTTTGATTTAATTAATGGTAAACCATTTCGCCTCATGTGGTCAC
AGCCAGATGACCGTTTAAGAAAGTCTGGAGTTGGAAATATATTCATCAAAAACTTGGATAAGACCATAGA
CAATAGGGCCTTATTTTATTTATTTTCGGCTTTTGGGAACATTCTTTCCTGTAAAGTCGTATGTGATGAC
AATGGCTCTAAGGGTTATGCTTATGTCCACTTCGATAGCCTTGCTGCTGCCAATAGGGCTATCTGGCACA
TGAATGGAGTGCGGCTCAATAACCGCCAGGTATATGTTGGTCGATTCAAATTTCCTGAAGAGAGAGCAGC
AGAAGTCAGAACCAGAGAAAGAGCAACATTTACCAATGTTTTCGTAAAAAACTTTGGAGATGACATTGAT
GATGAAAAACTAAACAAACTTTTCAGTGAATATGGGCCAACTGAGAGTGTTAAAGTCATAAGAGATGCCA
CTGGGAAATCTAAAGGCTTTGGATTTGTAAGATATGAAACACATGAAGCTGCCCAAAAGGCTGTGCTAGA
ACTGCATGGCAAGTCAATAGATGGGAAAGTCCTATGTGTAGGGAGAGCACAGAAGAAAATTGAACGCCTG
GCTGAATTAAGGCGGAGATTTGAACGGCTGAAATTAAAAGAAAAAAATAGGCCTTCAGGAGTGCCTATCT
ATATTAAGAACTTGGATGAGACCATCAATGATGAGAAACTAAAGGAGGAATTTTCTTCATTTGGATCAAT
CAGTCGAGCCAAAGTGATGATGGAAGTGGGACAAGGAAAAGGGTTTGGTGTTGTCTGCTTTTCTTCTTTT
GAAGAGGCGTGCAAAGCAGTGGATGAAATGAATGGTCGCATAATAGGCTCCAAGACATTGCATGTCACTC
TGGGGCAAGCTAGGCACAGGTGGTGA

Translation (381 aa):
MSGEPNTAGKKKKYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPAD
AEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKTIDNRALFYLFSAFGNILSCKVVCDD
NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRERATFTNVFVKNFGDDID
DEKLNKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERL
AELRRRFERLKLKEKNRPSGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSF
EEACKAVDEMNGRIIGSKTLHVTLGQARHRW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH