NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15515.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15515.1 Public Mus musculus 1 Igsf9 23 108 98 CCDS HistoryNCBI Gene:93842Re-query CCDS DB by CCDS ID:15515.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15515.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052629.12 ENSMUSP00000058275.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052629.12Link to Ensembl Protein Viewer:ENSMUSP00000058275.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000052629Re-query CCDS DB by Protein ID:ENSMUSP00000058275
Original member Current member EBI ENSMUST00000111235.7 ENSMUSP00000106866.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111235.7Link to Ensembl Protein Viewer:ENSMUSP00000106866.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111235Re-query CCDS DB by Protein ID:ENSMUSP00000106866
Original member Current member NCBI NM_001145800.1 NP_001139272.1 Accepted alive Link to Nucleotide Sequence:NM_001145800.1Link to Protein Sequence:NP_001139272.1Re-query CCDS DB by Nucleotide ID:NM_001145800Re-query CCDS DB by Protein ID:NP_001139272Link to BLAST:NP_001139272.1
Original member Current member NCBI NM_033608.3 NP_291086.2 Accepted alive Link to Nucleotide Sequence:NM_033608.3Link to Protein Sequence:NP_291086.2Re-query CCDS DB by Nucleotide ID:NM_033608Re-query CCDS DB by Protein ID:NP_291086Link to BLAST:NP_291086.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139272.1 1179 Q05BQ1-1 1179 100% 0 0
NP_291086.2 1179 Q05BQ1-1 1179 100% 0 0

Chromosomal Locations for CCDS 15515.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 172484489 172484546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172484782 172484970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172489513 172489665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172490289 172490443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172490655 172490772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172491615 172491756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172491865 172492010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172492101 172492243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172493487 172493627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172494098 172494214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172494406 172494556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172494753 172494876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172495108 172495283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172495534 172495784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172495983 172496067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172496151 172496327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172496598 172496640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172496886 172497746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172497997 172498124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 172498357 172498538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3540 nt):
ATGATTTGGTGTCTCCGTCTGACCGTCCTCAGCCTGATCATCAGCCAGGGGGCTGACGGTCGAAGAAAGC
CTGAGGTGGTCTCTGTGGTGGGCCGGGCTGGGGAGAGTGCAGTGCTGGGCTGTGACTTGCTGCCTCCAGC
TGGCCACCCCCCTCTGCATGTCATCGAGTGGCTGCGCTTTGGATTCCTGCTTCCCATCTTCATCCAGTTC
GGCCTCTACTCTCCCCGAATTGACCCCGATTACGTGGGACGAGTCCGGCTGCAGACAGGAGCATCTCTCC
AGATTGAGGGGCTCCGGGTGGAAGACCAGGGTTGGTACGAGTGCCGTGTGCTCTTCCTGGACCAACACAG
CCCTGAACAGGATTTTGCCAACGGCTCCTGGGTGCACCTGACAGTCAATTCGCCCCCTCAGTTCCAGGAG
ACACCTCCCTTAGTTCTGGAAGTCAAGGAGCTGGAGGCGGTTACCTTGCGCTGTGTGGCCCGTGGCAGCC
CTCAGCCTTATGTGACTTGGAAATTCCGAGGACAAGACCTTGGCAAGGGCCAGGGTCAGGTGCAAGTGCA
GAATGGAACACTGTGGATCCGTCGGGTGGAGCGAGGCAGCGCTGGAGACTACACCTGCCAAGCCTCCAGC
TCCGAGGGCAGCATCACCCACGCCACCCAGCTGTTGGTGCTAGGACCCCCTGTCATTGTGGTGCCCCCCA
GCAACAGTACAGTCAACTCCTCTCAGGATGTTTCCTTGGCCTGCCGGGCTGAGGCATACCCTGCTAACCT
CACCTACAGCTGGTTCCAGGATGGTGTCAATGTCTTCCATATCAGCCGCTTACAGTCTCGAGTGCGCATC
CTGGTAGACGGGAGCCTGTGGCTACAAGCCACTCAGCCTGATGACGCCGGCCACTATACCTGTGTTCCCA
GCAATGGCTTTCTGCATCCACCGTCAGCTTCTGCCTATCTCACTGTGCTCTACCCAGCCCAGGTGACAGT
CATGCCTCCCGAGACACCCCTGCCCACTGGCATGCGTGGGGTGATCCGGTGTCCGGTTCGTGCTAATCCC
CCACTACTGTTTGTCACCTGGACCAAAGACGGACAGGCCTTGCAGCTGGACAAGTTCCCTGGCTGGTCCC
TGGGCCCAGAAGGTTCCCTCATCATTGCCCTGGGGAATGAGAATGCCTTGGGAGAATACTCCTGCACCCC
CTACAACAGTCTTGGTACTGCTGGACCCTCCCCTGTGACCCAGGTGCTGCTCAAGGCTCCCCCGGCTTTT
ATAGACCAGCCCAAGGAAGAATATTTCCAAGAAGTAGGGCGGGAGCTACTCATCCCGTGCTCCGCCCGGG
GAGACCCTCCTCCTATTGTCTCTTGGGCCAAGGTGGGCCGGGGGCTGCAGGGCCAGGCCCAGGTGGACAG
CAACAACAGCCTCGTCCTTCGACCCCTGACCAAGGAGGCCCAGGGACGATGGGAATGCAGTGCCAGCAAT
GCTGTAGCCCGTGTGACCACTTCCACCAATGTATATGTGCTAGGCACCAGCCCCCATGTCGTCACCAATG
TGTCTGTGGTACCTTTACCCAAGGGTGCCAATGTCTCTTGGGAGCCTGGCTTTGATGGTGGCTATCTGCA
GAGATTCAGTGTCTGGTATACCCCACTAGCCAAGCGTCCTGACCGAGCCCACCATGACTGGGTATCTCTG
GCTGTGCCTATCGGGGCTACACACCTCCTAGTGCCAGGGCTGCAGGCTCACGCGCAGTATCAGTTCAGTG
TCCTTGCTCAGAATAAACTGGGCAGTGGGCCCTTCAGTGAGATTGTCCTGTCTATACCAGAAGGGCTTCC
TACCACACCGGCTGCCCCTGGGCTTCCTCCAACAGAGATACCACCTCCCCTGTCCCCTCCTAGAGGTTTG
GTGGCAGTGAGGACACCCCGGGGGGTACTTCTGCATTGGGATCCCCCAGAACTCATCCCTGGGAGGCTGG
ATGGCTACATCCTGGAGGGACGGCAAGGCTCCCAAGGCTGGGAGATCCTGGACCAAGGTGTGGCGGGCAC
AGAAATCCAGCTGCTGGTGCCTGGCCTCATCAAGGACGTTCTCTATGAGTTTCGCCTCGTGGCCTTCGCT
GATAGCTACGTCAGTGACCCCAGCAACGTAGCCAACATCTCCACTTCCGGCCTGGAGGTGTACCCCTCCC
GCACACAGCTACCAGGTCTCCTGCCCCAGCCTGTATTGGCTGGTGTTGTGGGTGGAGTCTGCTTCTTGGG
CGTGGCGGTCCTTGTGAGCATCCTAGCTGCCTGCCTGATGAATCGGCGCAGGGCTGCCCGACGCCACCGA
AAACGTCTGCGCCAGGATCCGCCTCTGATCTTCTCTCCACGTGGGAAGTCAGGCTCACACTCTGCTCCTG
GCTCAGGCAGCCCTGACAGCGTGACCAAGTTCAAGCTCCAAGGCTCCCCAGTTCCCAGCCTACGCCAGAG
TCTGCTCTGGGGGGAGCCTGCTCGACCGCCTAGCCCTCACCCGGATTCTCCACTTGGCCGGGGACCCTTA
CCATTAGAGCCCATTTGCAGGGGCCCAGATGGGCGCTTTGTGATGGGACCCACTGTGGCCCCCTCACAAG
AAAAGTTATGTCTGGAGCGCTCAGAACCTCGGACCTCAGCTAAACGCTTGGCTCAGTCCTTTGACTGTAG
CAGTAGCAGCCCCAGTGGGGTCCCACAACCCCTCTGCATTACAGACATCAGCCCTGTGGGGCAGCCTCTT
GCAGCCGTGCCTAGCCCCCTACCAGGTCCAGGACCCCTGCTCCAGTATCTGAGCCTACCCTTCTTCCGAG
AGATGAATGTGGACGGGGACTGGCCACCTCTTGAGGAGCCCACGCCTGCTCCGCCTCCAGATTTCATGGA
TAGTCAGCCCTGTCCCACCTCATCTTTCCTTCCACCACCAGACTCACCTCCTGCAAATCTCAGGGCAGTG
CTTCCTGGGACACTGATGGGGGTCGGGGTCTCCTCAGAGCCCCCTTACACAGCTTTGGCTGATTGGACTC
TGAGGGAGCGGGTCTTGCCGGGCCTTCTTTCTGCTGCCCCTCGTGGTAGCCTCACCAGCCAGAGCAGTGG
GAGGGGCAGCGCCTCCTTCCTGCGCCCTCCCTCCACAGCCCCCTCCGCAGGGGGAAGCTACCTCAGTCCA
GCTCCAGGAGACACAAGCAGCTGGGCCAGTGGCCCAGAAAGGTGGCCCCGCAGGGAGCATGTGGTGACAG
TCAGCAAAAGGAGGAACACCTCTGTGGATGAGAACTATGAATGGGATTCGGAATTCCCAGGGGACATGGA
GCTGCTAGAGACCTGGCACCCAGGCTTGGCCAGTTCTCGGACCCATCCTGAACTTGAGCCAGAGTTAGGT
GTCAAGACTCCAGAGGAGAGCTGTCTCCTGAACCCAACCCATGCTGCCGGCCCCGAGGCCCGCTGTGCTG
CCCTTCGGGAGGAATTCCTAGCTTTCCGCAGACGCAGGGATGCTACCAGGGCCCGGCTACCAGCCTATCA
GCAGTCCATCTCTTACCCTGAACAGGCTACTCTGCTATGA

Translation (1179 aa):
MIWCLRLTVLSLIISQGADGRRKPEVVSVVGRAGESAVLGCDLLPPAGHPPLHVIEWLRFGFLLPIFIQF
GLYSPRIDPDYVGRVRLQTGASLQIEGLRVEDQGWYECRVLFLDQHSPEQDFANGSWVHLTVNSPPQFQE
TPPLVLEVKELEAVTLRCVARGSPQPYVTWKFRGQDLGKGQGQVQVQNGTLWIRRVERGSAGDYTCQASS
SEGSITHATQLLVLGPPVIVVPPSNSTVNSSQDVSLACRAEAYPANLTYSWFQDGVNVFHISRLQSRVRI
LVDGSLWLQATQPDDAGHYTCVPSNGFLHPPSASAYLTVLYPAQVTVMPPETPLPTGMRGVIRCPVRANP
PLLFVTWTKDGQALQLDKFPGWSLGPEGSLIIALGNENALGEYSCTPYNSLGTAGPSPVTQVLLKAPPAF
IDQPKEEYFQEVGRELLIPCSARGDPPPIVSWAKVGRGLQGQAQVDSNNSLVLRPLTKEAQGRWECSASN
AVARVTTSTNVYVLGTSPHVVTNVSVVPLPKGANVSWEPGFDGGYLQRFSVWYTPLAKRPDRAHHDWVSL
AVPIGATHLLVPGLQAHAQYQFSVLAQNKLGSGPFSEIVLSIPEGLPTTPAAPGLPPTEIPPPLSPPRGL
VAVRTPRGVLLHWDPPELIPGRLDGYILEGRQGSQGWEILDQGVAGTEIQLLVPGLIKDVLYEFRLVAFA
DSYVSDPSNVANISTSGLEVYPSRTQLPGLLPQPVLAGVVGGVCFLGVAVLVSILAACLMNRRRAARRHR
KRLRQDPPLIFSPRGKSGSHSAPGSGSPDSVTKFKLQGSPVPSLRQSLLWGEPARPPSPHPDSPLGRGPL
PLEPICRGPDGRFVMGPTVAPSQEKLCLERSEPRTSAKRLAQSFDCSSSSPSGVPQPLCITDISPVGQPL
AAVPSPLPGPGPLLQYLSLPFFREMNVDGDWPPLEEPTPAPPPDFMDSQPCPTSSFLPPPDSPPANLRAV
LPGTLMGVGVSSEPPYTALADWTLRERVLPGLLSAAPRGSLTSQSSGRGSASFLRPPSTAPSAGGSYLSP
APGDTSSWASGPERWPRREHVVTVSKRRNTSVDENYEWDSEFPGDMELLETWHPGLASSRTHPELEPELG
VKTPEESCLLNPTHAAGPEARCAALREEFLAFRRRRDATRARLPAYQQSISYPEQATLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH