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Report for CCDS88968.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88968.1 Public Mus musculus 16 Eva1c 23 108 98 CCDS HistoryNCBI Gene:70967Re-query CCDS DB by CCDS ID:88968.1Re-query CCDS DB by GeneID:70967See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88968.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000231280.1 ENSMUSP00000156225.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000231280.1Link to Ensembl Protein Viewer:ENSMUSP00000156225.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000231280Re-query CCDS DB by Protein ID:ENSMUSP00000156225
Original member Current member NCBI NM_001316761.1 NP_001303690.1 Accepted alive Link to Nucleotide Sequence:NM_001316761.1Link to Protein Sequence:NP_001303690.1Re-query CCDS DB by Nucleotide ID:NM_001316761Re-query CCDS DB by Protein ID:NP_001303690Link to BLAST:NP_001303690.1

Chromosomal Locations for CCDS 88968.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 90831273 90831432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90876039 90876191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90890530 90890673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90894578 90894655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90897364 90897453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90904104 90904480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1002 nt):
ATGCTCCTGCCAGGACACCCGCGTCCACCACCCGCGCCCCAATCGGCGCAGAATCAGGGCCTCCGCAGGC
AGGTAGAGCCTCCGGGGCAGCTTCTGCGCCTGTTCTACTGCACGGTCCTAGTGTGCTCCAAAGAGACCTC
CGCGCTCACCGATTTCTCTGATGAGTTGAAAAACAAGACAGTGTGTGAAAACCAGGAGTTGAAGCTACAC
TGCCATGAGTCCAAGTTCCTCAACATCTACTCCGCCGCCTACGGCCGGAGGACCCAGCAAAGAGACATCT
GCTCCTCCGGGGCGGAGCTGCTGCCCCCCTTCGACTGCCTGTCTTACACGGCTTTACAAGTCCTGTCCAG
GAGGTGCTATGGGAAGCAGAGATGTAAGGTCCTCGTCGATAATTACCACTTCGGAAGCCCCTGTCTTCCA
GGAGTGAAAAAATACCTCACTGTTGCCTACGCATGTGTTCCCAAGAACATACTCACGGCAGTGGATCCGG
CTGTTGCTAATCTAAATCCTTCTCTGAAGAAAGATGATGAACACGGTATAACATTCAACCCAAGCGGGTC
GAGGGTTGTGCGGAAAGATGGCGTTATCGTCAGCAACTCTCTGGCCGCGTTCGCTTACATTCGAGCCCAC
CCAGAGAGAGCCGCTCTGCTGTTCATGTCCAGTGTCTGCATCGGCCTGCTCCTCACACTGTGTGCCCTGG
TCATCAGGGTGTCCTGTACGAAGGACTTCCGGGAGCTGAGGCAGGGGAGGGAGCACCTGGTGCTAGGGAG
CGACAAGGCGGAGGAGGACAGCGAGGAAGACTTGGAAGAGGAGGACTCCTCGGATTCGCAGTTTCCCGAG
GAGTTGTCCAGGTTTTGTAGGACTTCATATCCAGCCTATAGCTCTATAGAAGCCGCCGAGCTGGCGGAAA
GGATTGAACGCAGGGAGCAAGTCATTCAAGAGATATGGATGAACAGTGGCCTGGATTCCTCACTCCCCAG
GAACGTCGGCCACTTCTACTGA

Translation (333 aa):
MLLPGHPRPPPAPQSAQNQGLRRQVEPPGQLLRLFYCTVLVCSKETSALTDFSDELKNKTVCENQELKLH
CHESKFLNIYSAAYGRRTQQRDICSSGAELLPPFDCLSYTALQVLSRRCYGKQRCKVLVDNYHFGSPCLP
GVKKYLTVAYACVPKNILTAVDPAVANLNPSLKKDDEHGITFNPSGSRVVRKDGVIVSNSLAAFAYIRAH
PERAALLFMSSVCIGLLLTLCALVIRVSCTKDFRELRQGREHLVLGSDKAEEDSEEDLEEEDSSDSQFPE
ELSRFCRTSYPAYSSIEAAELAERIERREQVIQEIWMNSGLDSSLPRNVGHFY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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