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Report for CCDS29885.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29885.1 Public Mus musculus 19 Pcgf6 23 108 98 CCDS HistoryNCBI Gene:71041Re-query CCDS DB by CCDS ID:29885.1Re-query CCDS DB by GeneID:71041See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29885.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026032.6 ENSMUSP00000026032.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026032.6Link to Ensembl Protein Viewer:ENSMUSP00000026032.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000026032Re-query CCDS DB by Protein ID:ENSMUSP00000026032
Original member Current member NCBI NM_027654.3 NP_081930.1 Accepted alive Link to Nucleotide Sequence:NM_027654.3Link to Protein Sequence:NP_081930.1Re-query CCDS DB by Nucleotide ID:NM_027654Re-query CCDS DB by Protein ID:NP_081930Link to BLAST:NP_081930.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081930.1 353 Q99NA9 353 100% 0 0

Chromosomal Locations for CCDS 29885.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 47034629 47034685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47037238 47037324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47040044 47040142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47042766 47042793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47045810 47045918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47047947 47048006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47048108 47048163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47048800 47048896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47048990 47049089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47050451 47050819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1062 nt):
ATGGACGAGGCTGAGACGGACGCCACGGAAAACAAGCGCGCCTCTGAGGCCAAGCGAGCCTCAGCCATGC
CGCCACCGCCACCGCCTCCGCCTCCCATCTCTCCGCCCGCCCTCATCCCGGCACCCGCGGCCGGCGAGGA
GGGCCCGGCGTCCCTGGGCCAGGCGGGCGCTGCCGGCTGCTCTCGCTCTCGGCCCCCGGCGTTGGAGCCC
GAGCGCAGCCTGGGCCGCTTGAGAGGCCGCTTCGAGGACTACGATGAAGAGTTGGAAGAGGAGGAGGAGA
TGGAGGAGGAAGAAGAGGAGGAGGAAGAGATGAGCCACTTCTCTCTGCGTCTGGAGTCCGGACGGGCAGA
CTCCGAGGACGAGGAGGAGCGCCTGATAAACCTTGTCGAGCTGACCCCCTACATCCTGTGTTCGATTTGC
AAAGGTTACCTGATAGATGCAACCACCATTACAGAGTGTCTTCATACCTTTTGTAAAAGCTGCATTGTGA
GACATTTTTACTATAGTAACAGATGCCCAAAATGCAACATAGTTGTCCACCAGACTCAGCCTCTTTATAA
TATAAGGTTGGACCGGCAGTTACAAGACATAGTATACAAATTAGTGATCAATCTAGAGGAAAGAGAAAAA
AAGCAAATGCATGACTTCTATAAAGAAAGAGGTCTAGAAGTCCCCAAGCCTGCTGCTCCACAGCCAGTCC
CTTCAAGCAAAGGAAAAACCAAGAAGGTCCTAGAGTCAGTGTTTCGTATTCCACCTGAACTTGATATGTC
TTTATTACTTGAGTTCATTGGTGCTAATGAAGACACCGGACATTTTAAGCCATTGGAAAAGAAGTTTGTG
CGTGTTTCAGGAGAAGCAACTATCGGGCATGTAGAAAAATTTCTTAGAAGAAAAATGGGTCTTGATCCAG
CTTGTCAGGTAGATATCATCTGTGGGGATCACTTACTGGAGCGGTACCAAACTCTACGGGAAATCCGACG
TGCAATAGGTGATACAGCAATGCAGGACGGTCTGCTTGTTCTTCATTATGGTCTTGTGGTTTCTCCTTTG
AAAATAACTTGA

Translation (353 aa):
MDEAETDATENKRASEAKRASAMPPPPPPPPPISPPALIPAPAAGEEGPASLGQAGAAGCSRSRPPALEP
ERSLGRLRGRFEDYDEELEEEEEMEEEEEEEEEMSHFSLRLESGRADSEDEEERLINLVELTPYILCSIC
KGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLYNIRLDRQLQDIVYKLVINLEEREK
KQMHDFYKERGLEVPKPAAPQPVPSSKGKTKKVLESVFRIPPELDMSLLLEFIGANEDTGHFKPLEKKFV
RVSGEATIGHVEKFLRRKMGLDPACQVDIICGDHLLERYQTLREIRRAIGDTAMQDGLLVLHYGLVVSPL
KIT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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