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Report for CCDS35898.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35898.1 Public Mus musculus 10 Gopc 23 108 98 CCDS HistoryNCBI Gene:94221Re-query CCDS DB by CCDS ID:35898.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35898.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020008.9 ENSMUSP00000020008.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020008.9Link to Ensembl Protein Viewer:ENSMUSP00000020008.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000020008Re-query CCDS DB by Protein ID:ENSMUSP00000020008
Original member Current member NCBI NM_053187.3 NP_444417.2 Accepted alive Link to Nucleotide Sequence:NM_053187.3Link to Protein Sequence:NP_444417.2Re-query CCDS DB by Nucleotide ID:NM_053187Re-query CCDS DB by Protein ID:NP_444417Link to BLAST:NP_444417.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444417.2 455 Q8BH60-2 455 100% 0 0

Chromosomal Locations for CCDS 35898.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 52339723 52339853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 52346049 52346229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 52349072 52349236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 52350601 52350696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 52353327 52353492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 52354572 52354747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 52358773 52358937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 52381611 52381898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1368 nt):
ATGTCGGCGGGTGGCCCATGCCCGGCGGGAGCCGGCGGCGGCCCAGGGGGCTCCTCCTGCCCTGTGGGGG
TCTCCCCTGGCGGGGTGTCCATGTTCCGATGGCTTGAGGTGCTGGAGAAGGAGTTCGACAAGGCCTTCGT
GGATGTGGATCTGCTTTTGGGCGAGATCGATCCGGACCAGGCGGACATCACTTATGAGGGGCGTCAGAAG
ATGACCAGCCTTAGCTCCTGCTTTGCGCAGCTATGCCACAAAGCCCAGACTGTGTCCCAGATCAACCACA
AGCTTGAGGCACAGTTGGTGGATCTGCGATCGGAATTGACAGAGACTCAAGCAGAGAAAGTTGTTCTGGA
GAAAGAAGTCCACGAGCAGCTTTTACAGCTGCACTCCACTCAGCTTCAGCTTCATGCCAAGACTGGTCAA
AGTGTTGACTCTGGGGCCATCAAGGCAAAATTGGAAAGAGAACTTGAAGCAAATAAAACAGAAAAGGTAA
AAGAAGCTCGACTTGAAGCTGAAGTGAAGCTACTAAGGAAGGAGAACGAGGCTCTTCGAAGGCACATAGC
TGTTCTCCAGGCTGAAGTTTATGGGGCGAGGTTGGCTGCCAAGTACTTGGATAAGGAGCTGGCCGGCAGG
GTGCAACAGATACAATTACTGGGACGGGATATGAAGGGACCTGCTCACGATAAGCTCTGGAACCAGTTAG
AAGCTGAAATACATTTGCATCGCCACAAAACTGTCATCAGAGCCTGCAGAGGGCGCAACGACTTGAAGCG
GCCCATGCAAGCACCCCCAGGCCACGATCAAGACTCTTTGAAGAAAAGCCAGGGAGTCGGTCCAATTAGA
AAAGTTCTCCTCCTTAAGGAAGACCATGAAGGCCTGGGCATTTCTATCACAGGTGGGAAAGAGCACGGTG
TTCCCATCCTCATCTCTGAGATCCACCCGGGACAGCCTGCGGATAGATGTGGAGGGCTGCATGTTGGAGA
TGCTATTCTGGCAGTCAATGGAGTCAACCTAAGAGACACAAAGCATAAAGAAGCTGTAACTATACTCTCC
CAGCAGAGAGGAGAGATTGAGTTTGAAGTAGTCTACGTGGCACCTGAAGTGGATTCTGACGATGAAAATG
TAGAGTATGAAGACGAGAGTGGACACCGCTATCGTCTGTATCTTGACGAGTTAGAAGGCAGTGGGAATTC
TGGTGCTAGTTGCAAAGACAGCAGTGGCGAGATGAAAATGTTACAAGGGTATAACAAGAAGGCAGTGAGG
GATGCGCATGAGAATGGGGACGTGGGGGCTGCAGGTGAGAGCCCTCTGGATGACACTGCTGCGAGAGCGG
CTCATCTGCACAGCCTGCATCAGAAGAAGGCCTACTAA

Translation (455 aa):
MSAGGPCPAGAGGGPGGSSCPVGVSPGGVSMFRWLEVLEKEFDKAFVDVDLLLGEIDPDQADITYEGRQK
MTSLSSCFAQLCHKAQTVSQINHKLEAQLVDLRSELTETQAEKVVLEKEVHEQLLQLHSTQLQLHAKTGQ
SVDSGAIKAKLERELEANKTEKVKEARLEAEVKLLRKENEALRRHIAVLQAEVYGARLAAKYLDKELAGR
VQQIQLLGRDMKGPAHDKLWNQLEAEIHLHRHKTVIRACRGRNDLKRPMQAPPGHDQDSLKKSQGVGPIR
KVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILS
QQRGEIEFEVVYVAPEVDSDDENVEYEDESGHRYRLYLDELEGSGNSGASCKDSSGEMKMLQGYNKKAVR
DAHENGDVGAAGESPLDDTAARAAHLHSLHQKKAY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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