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Report for CCDS22898.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22898.1 Public Mus musculus 9 S1pr5 23 108 98 CCDS HistoryNCBI Gene:94226Re-query CCDS DB by CCDS ID:22898.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22898.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000122088.1 ENSMUSP00000113843.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122088.1Link to Ensembl Protein Viewer:ENSMUSP00000113843.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122088Re-query CCDS DB by Protein ID:ENSMUSP00000113843
Original member Current member NCBI NM_053190.2 NP_444420.1 Accepted alive Link to Nucleotide Sequence:NM_053190.2Link to Protein Sequence:NP_444420.1Re-query CCDS DB by Nucleotide ID:NM_053190Re-query CCDS DB by Protein ID:NP_444420Link to BLAST:NP_444420.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444420.1 400 Q91X56 400 100% 0 0

Chromosomal Locations for CCDS 22898.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 21243926 21245128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1203 nt):
ATGGAGCCCGGGCTGCTGCGGCCGGCGCCGGTGAGTGAGGTTATTGTCCTTCACTACAACTACACCGGCA
AGCTCCGCGGGGCGCGCTACCAGCCCGGCGCCGGCCTGCGCGCAGACGCCGCAGTGTGTCTGGCTGTGTG
TGCCTTCATTGTGCTGGAGAACTTGGCTGTGCTCTTGGTGCTGGTCCGCCACCCTCGCTTCCATGCGCCC
ATGTTTCTGCTCCTTGGCAGCCTCACTTTGTCGGACCTGCTCGCCGGGGCGGCCTACGCCACCAACATCC
TACTGTCCGGGCCGCTCACGCTGCGCCTGTCGCCTGCGCTTTGGTTTGCGCGTGAGGGGGGCGTCTTCGT
GGCGCTCGCCGCGTCGGTGCTGAGCCTCTTGGCCATTGCTTTAGAGCGCCACCTTACCATGGCCCGTCGT
GGACCCGCACCCGCCGCCAGTCGCGCTCGCACGCTGGCGATGGCGGTGGCCGCCTGGGGCGCGTCGCTAT
TGCTCGGGCTGCTACCCGCGCTGGGCTGGAACTGCTTAGGACGCCTGGAAACCTGCTCCACCGTGCTGCC
GCTCTACGCCAAGGCCTATGTGCTCTTCTGCGTGCTGGCCTTCCTGGGCATCCTGGCTGCCATCTGTGCG
CTCTATGCAAGGATTTACTGTCAGGTGCGGGCCAACGCGCGTCGCCTGCGGGCGGGTCCTGGGTCCCGCA
GGGCCACCTCGTCCTCGCGATCCCGGCACACGCCGCGGTCGCTGGCCCTGCTTCGTACCCTTAGCGTGGT
GCTCCTGGCCTTCGTGGCCTGCTGGGGACCGCTGTTTCTCTTGCTATTACTGGATGTCGCGTGCCCAGCC
CGCGCGTGTCCCGTGCTCCTGCAGGCCGATCCCTTCCTGGGTCTAGCCATGGCTAACTCGCTGCTGAATC
CCATCATCTACACCTTCACCAACCGAGATCTGCGCCACGCGCTCCTGCGGCTGCTCTGCTGTGGCCGCGG
ACCCTGCAACCAAGACTCCTCCAACAGCTTGCAGCGATCCCCCAGTGCTGCCGGGCCTTCCGGTGGTGGC
CTGCGACGCTGCCTGCCACCAACCTTGGATCGCAGCTCTAGCCCATCAGAACACTTGTCTCCCCAGCAGG
ACGGGGTGGACACCAGCTGCTCCACCGGCAGTCCTGGAGTAGCAACCGCCAACCGGAGCCTGGTGCCTAC
TGCTACAGACTGA

Translation (400 aa):
MEPGLLRPAPVSEVIVLHYNYTGKLRGARYQPGAGLRADAAVCLAVCAFIVLENLAVLLVLVRHPRFHAP
MFLLLGSLTLSDLLAGAAYATNILLSGPLTLRLSPALWFAREGGVFVALAASVLSLLAIALERHLTMARR
GPAPAASRARTLAMAVAAWGASLLLGLLPALGWNCLGRLETCSTVLPLYAKAYVLFCVLAFLGILAAICA
LYARIYCQVRANARRLRAGPGSRRATSSSRSRHTPRSLALLRTLSVVLLAFVACWGPLFLLLLLDVACPA
RACPVLLQADPFLGLAMANSLLNPIIYTFTNRDLRHALLRLLCCGRGPCNQDSSNSLQRSPSAAGPSGGG
LRRCLPPTLDRSSSPSEHLSPQQDGVDTSCSTGSPGVATANRSLVPTATD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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