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Report for CCDS29943.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29943.1 Public Mus musculus 19 Sfxn4 23 108 98 CCDS HistoryNCBI Gene:94281Re-query CCDS DB by CCDS ID:29943.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29943.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000135808.7 ENSMUSP00000118743.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000135808.7Link to Ensembl Protein Viewer:ENSMUSP00000118743.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000135808Re-query CCDS DB by Protein ID:ENSMUSP00000118743
Original member Current member NCBI NM_053198.4 NP_444428.3 Accepted alive Link to Nucleotide Sequence:NM_053198.4Link to Protein Sequence:NP_444428.3Re-query CCDS DB by Nucleotide ID:NM_053198Re-query CCDS DB by Protein ID:NP_444428Link to BLAST:NP_444428.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444428.3 313 Q925N1 313 100% 0 0

Chromosomal Locations for CCDS 29943.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 60838973 60839050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60842119 60842236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60844209 60844294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60850959 60851074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60852012 60852090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60853687 60853752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60853864 60853920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60854007 60854060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60855827 60855852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60857210 60857264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60857350 60857376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60858664 60858738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60860029 60860094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 60861299 60861337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGGAACCCAACCTGCAGTTCTGGATTTCCGAACGCCAAGCCTTTTTTCGAAGATTTTGTCAGTGGATGG
ATTTATTAGATCCTGTAAACATGTTTATTTCAATTGGAAGCATAGAAAAATCACGACAGTTGTTATTTAC
CACTGAAGATGCACCCAAACACTACCTGGATAACCAAGTGATTAAAGACGCATGGAATAAGAGTCTTTCA
ACTGTGCACCCTGACAGCAGCAAGTTGATCCCCCATCTTTTTCGACCTGCAGCTTTCCTGCCTGTGACAG
CACCCATGGTATTTCTGTTGATGATGCCAGACACTGGAATAAAGTCCATCATTTTAACTCAGGGTTGCTT
GTATGGATACACCACAGCCTTTAACATCACCAATGGAAATGCCAGTTATAGTCATGGACCAGTAGAGAGA
ACATTGTTGGGAGCAGGGGTGTCTGTGTCTTCAACTTTCATTGGATTAATTCCTCATCTCTTTCAAATGA
AGTATCCCCCGAATAACTTTTGGCTTAAAAGAACCTTGCCAATCGTCTTTCTTGCCCAAGTCAGTGGAAT
GAATGTTTTTGCATCCCGCAGTTTTGAAAACCATCGAGGAATTGAGGTGATGGATAAGGAAGGCCATGTC
GTAGGCCATTCCAGAAAAGCTGGAAGAAAGGCTATTAAAGATACAGCGAAATCCAGAGCAGTGCTGTTTG
GGACCTCAGCCTTGGCCCCTGAACTCTTTATCCACATCTTTAAAAGGACGAGGTTTTACCCACAGACTCT
GCTGTCACTCGTGATCCTGAGAATGAGTTCCACATTCTTTATGATGGGACTGATGGTGCCAGTGTCATTC
AGCATGTTTCCACAGATTGGACAGATCCAGTGCAGTCAGCTTGAAGAGAAGATTCAATCTTCTACAGAAG
AAAAGGAACTCTTCTATTACAGAGGGGTATAG

Translation (313 aa):
MEPNLQFWISERQAFFRRFCQWMDLLDPVNMFISIGSIEKSRQLLFTTEDAPKHYLDNQVIKDAWNKSLS
TVHPDSSKLIPHLFRPAAFLPVTAPMVFLLMMPDTGIKSIILTQGCLYGYTTAFNITNGNASYSHGPVER
TLLGAGVSVSSTFIGLIPHLFQMKYPPNNFWLKRTLPIVFLAQVSGMNVFASRSFENHRGIEVMDKEGHV
VGHSRKAGRKAIKDTAKSRAVLFGTSALAPELFIHIFKRTRFYPQTLLSLVILRMSSTFFMMGLMVPVSF
SMFPQIGQIQCSQLEEKIQSSTEEKELFYYRGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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