NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4334.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4334.1 Public Homo sapiens 5 MED7 24 110 108 CCDS HistoryNCBI Gene:9443Re-query CCDS DB by CCDS ID:4334.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4334.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000286317.6 ENSP00000286317.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000286317.6Link to Ensembl Protein Viewer:ENSP00000286317.5Re-query CCDS DB by Nucleotide ID:ENST00000286317Re-query CCDS DB by Protein ID:ENSP00000286317
Original member Current member EBI ENST00000420343.1 ENSP00000401046.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000420343.1Link to Ensembl Protein Viewer:ENSP00000401046.1Re-query CCDS DB by Nucleotide ID:ENST00000420343Re-query CCDS DB by Protein ID:ENSP00000401046
Original member Current member NCBI NM_001100816.1 NP_001094286.1 Accepted alive Link to Nucleotide Sequence:NM_001100816.1Link to Protein Sequence:NP_001094286.1Re-query CCDS DB by Nucleotide ID:NM_001100816Re-query CCDS DB by Protein ID:NP_001094286Link to BLAST:NP_001094286.1
Original member Current member NCBI NM_004270.5 NP_004261.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004270.5Link to Protein Sequence:NP_004261.1Re-query CCDS DB by Nucleotide ID:NM_004270Re-query CCDS DB by Protein ID:NP_004261Link to BLAST:NP_004261.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001094286.1 233 O43513 233 100% 0 0
NP_004261.1 233 O43513 233 100% 0 0

Chromosomal Locations for CCDS 4334.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 157138730 157139431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (702 nt):
ATGGGTGAACCACAGCAAGTGAGTGCACTTCCACCACCTCCAATGCAATATATCAAGGAATATACGGATG
AAAATATTCAAGAAGGCTTAGCTCCCAAGCCTCCCCCTCCAATAAAAGACAGTTACATGATGTTTGGCAA
TCAGTTCCAATGTGATGATCTTATCATCCGCCCTTTGGAAAGTCAGGGCATCGAACGGCTTCATCCTATG
CAGTTTGATCACAAGAAAGAACTGAGAAAACTTAATATGTCTATCCTTATTAATTTCTTGGACCTTTTAG
ATATTTTAATAAGGAGCCCTGGGAGTATAAAACGAGAAGAGAAACTAGAAGATCTTAAGCTGCTTTTTGT
ACACGTGCATCATCTTATAAATGAATACCGACCCCACCAAGCAAGAGAGACCTTGAGAGTCATGATGGAG
GTCCAGAAACGTCAACGGCTTGAAACAGCTGAGAGATTTCAAAAGCACCTGGAACGAGTAATTGAAATGA
TTCAGAATTGCTTGGCTTCTTTGCCTGATGATTTGCCTCATTCAGAAGCAGGAATGAGAGTAAAAACTGA
ACCAATGGATGCTGATGATAGCAACAATTGTACTGGACAGAATGAACATCAAAGAGAAAATTCAGGTCAT
AGGAGAGATCAGATTATAGAGAAAGATGCTGCCTTGTGTGTCCTAATTGATGAGATGAATGAAAGACCAT
GA

Translation (233 aa):
MGEPQQVSALPPPPMQYIKEYTDENIQEGLAPKPPPPIKDSYMMFGNQFQCDDLIIRPLESQGIERLHPM
QFDHKKELRKLNMSILINFLDLLDILIRSPGSIKREEKLEDLKLLFVHVHHLINEYRPHQARETLRVMME
VQKRQRLETAERFQKHLERVIEMIQNCLASLPDDLPHSEAGMRVKTEPMDADDSNNCTGQNEHQRENSGH
RRDQIIEKDAALCVLIDEMNERP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH