NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS12794.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12794.1 Public Homo sapiens 19 NAPSA 24 110 108 CCDS HistoryNCBI Gene:9476Re-query CCDS DB by CCDS ID:12794.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12794.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000253719.7 ENSP00000253719.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000253719.7Link to Ensembl Protein Viewer:ENSP00000253719.1Re-query CCDS DB by Nucleotide ID:ENST00000253719Re-query CCDS DB by Protein ID:ENSP00000253719
Original member Current member NCBI NM_004851.3 NP_004842.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004851.3Link to Protein Sequence:NP_004842.1Re-query CCDS DB by Nucleotide ID:NM_004851Re-query CCDS DB by Protein ID:NP_004842Link to BLAST:NP_004842.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004842.1 420 O96009 420 100% 0 0

Chromosomal Locations for CCDS 12794.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 50358553 50358780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50359011 50359109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50359503 50359647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50359740 50359862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50360941 50361140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50361663 50361781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50361969 50362092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50362172 50362313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 50365539 50365621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGTCTCCACCACCGCTGCTGCAACCCCTGCTGCTGCTGCTGCCTCTGCTGAATGTGGAGCCTTCCGGGG
CCACACTGATCCGCATCCCTCTTCATCGAGTCCAACCTGGACGCAGGATCCTGAACCTACTGAGGGGATG
GAGAGAACCAGCAGAGCTCCCCAAGTTGGGGGCCCCATCCCCTGGGGACAAGCCCATCTTCGTACCTCTC
TCGAACTACAGGGATGTGCAGTATTTTGGGGAAATTGGGCTGGGAACGCCTCCACAAAACTTCACTGTTG
CCTTTGACACTGGCTCCTCCAATCTCTGGGTCCCGTCCAGGAGATGCCACTTCTTCAGTGTGCCCTGCTG
GTTACACCACCGATTTGATCCCAAAGCCTCTAGCTCCTTCCAGGCCAATGGGACCAAGTTTGCCATTCAA
TATGGAACTGGGCGGGTAGATGGAATCCTGAGCGAGGACAAGCTGACTATTGGTGGAATCAAGGGTGCAT
CAGTGATTTTCGGGGAGGCTCTCTGGGAGCCCAGCCTGGTCTTCGCTTTTGCCCATTTTGATGGGATATT
GGGCCTCGGTTTTCCCATTCTGTCTGTGGAAGGAGTTCGGCCCCCGATGGATGTACTGGTGGAGCAGGGG
CTATTGGATAAGCCTGTCTTCTCCTTTTACCTCAACAGGGACCCTGAAGAGCCTGATGGAGGAGAGCTGG
TCCTGGGGGGCTCGGACCCGGCACACTACATCCCACCCCTCACCTTCGTGCCAGTCACGGTCCCTGCCTA
CTGGCAGATCCACATGGAGCGTGTGAAGGTGGGCCCAGGGCTGACTCTCTGTGCCAAGGGCTGTGCTGCC
ATCCTGGATACGGGCACGTCCCTCATCACAGGACCCACTGAGGAGATCCGGGCCCTGCATGCAGCCATTG
GGGGAATCCCCTTGCTGGCTGGGGAGTACATCATCCTGTGCTCGGAAATCCCAAAGCTCCCCGCAGTCTC
CTTCCTTCTTGGGGGGGTCTGGTTTAACCTCACGGCCCATGATTACGTCATCCAGACTACTCGAAATGGC
GTCCGCCTCTGCTTGTCCGGTTTCCAGGCCCTGGATGTCCCTCCGCCTGCAGGGCCCTTCTGGATCCTCG
GTGACGTCTTCTTGGGGACGTATGTGGCCGTCTTCGACCGCGGGGACATGAAGAGCAGCGCCCGGGTGGG
CCTGGCGCGCGCTCGCACTCGCGGAGCGGACCTCGGATGGGGAGAGACTGCGCAGGCGCAGTTCCCCGGG
TGA

Translation (420 aa):
MSPPPLLQPLLLLLPLLNVEPSGATLIRIPLHRVQPGRRILNLLRGWREPAELPKLGAPSPGDKPIFVPL
SNYRDVQYFGEIGLGTPPQNFTVAFDTGSSNLWVPSRRCHFFSVPCWLHHRFDPKASSSFQANGTKFAIQ
YGTGRVDGILSEDKLTIGGIKGASVIFGEALWEPSLVFAFAHFDGILGLGFPILSVEGVRPPMDVLVEQG
LLDKPVFSFYLNRDPEEPDGGELVLGGSDPAHYIPPLTFVPVTVPAYWQIHMERVKVGPGLTLCAKGCAA
ILDTGTSLITGPTEEIRALHAAIGGIPLLAGEYIILCSEIPKLPAVSFLLGGVWFNLTAHDYVIQTTRNG
VRLCLSGFQALDVPPPAGPFWILGDVFLGTYVAVFDRGDMKSSARVGLARARTRGADLGWGETAQAQFPG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH