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Report for CCDS43935.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43935.1 Public Homo sapiens X SSX4B 24 110 108 CCDS HistoryNCBI Gene:548313Re-query CCDS DB by CCDS ID:43935.1Re-query CCDS DB by GeneID:548313See the combined annotation on chromosome X in Sequence Viewer

Public Note for CCDS 43935.1
SSXB4 is identical to SSX4 as it produces the same protein product. This protein is likey to be functional despite arising from a duplication, therefore this CCDS has been retained.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by CCDS collaboration)

Sequence IDs included in CCDS 43935.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000619890.1 ENSP00000481765.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000619890.1Link to Ensembl Protein Viewer:ENSP00000481765.1Re-query CCDS DB by Nucleotide ID:ENST00000619890Re-query CCDS DB by Protein ID:ENSP00000481765
Original member Current member NCBI NM_001040612.4 NP_001035702.1 Accepted alive Link to Nucleotide Sequence:NM_001040612.4Link to Protein Sequence:NP_001035702.1Re-query CCDS DB by Nucleotide ID:NM_001040612Re-query CCDS DB by Protein ID:NP_001035702Link to BLAST:NP_001035702.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035702.1 153 O60224-2 153 100% 0 0

Chromosomal Locations for CCDS 43935.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 48402643 48402669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48403452 48403556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48408065 48408114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48409978 48410073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48410750 48410864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48411304 48411372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (462 nt):
ATGAACGGAGACGACGCCTTTGCAAGGAGACCCAGGGATGATGCTCAAATATCAGAGAAGTTACGAAAGG
CCTTCGATGATATTGCCAAATACTTCTCTAAGAAAGAGTGGGAAAAGATGAAATCCTCGGAGAAAATCGT
CTATGTGTATATGAAGCTAAACTATGAGGTCATGACTAAACTAGGTTTCAAGGTCACCCTCCCACCTTTC
ATGCGTAGTAAACGGGCTGCAGACTTCCACGGGAATGATTTTGGTAACGATCGAAACCACAGGAATCAGG
TTGAACGTCCTCAGATGACTTTCGGCAGCCTCCAGAGAATCTTCCCGAAGGACCCAAAAGGGGGAAACAT
GCCTGGACCCACAGACTGCGTGAGAGAAAGCAGCTGGTGGTTTATGAAGAGATCAGCGACCCTGAGGAAG
ATGACGAGTAACTCCCCTCGGGGATATGACACATGCCCATGA

Translation (153 aa):
MNGDDAFARRPRDDAQISEKLRKAFDDIAKYFSKKEWEKMKSSEKIVYVYMKLNYEVMTKLGFKVTLPPF
MRSKRAADFHGNDFGNDRNHRNQVERPQMTFGSLQRIFPKDPKGGNMPGPTDCVRESSWWFMKRSATLRK
MTSNSPRGYDTCP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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