NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS4229.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4229.1 Public Homo sapiens 5 APBB3 24 110 108 CCDS HistoryNCBI Gene:10307Re-query CCDS DB by CCDS ID:4229.1Re-query CCDS DB by GeneID:10307See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4229.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357560.9 ENSP00000350171.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000357560.9Link to Ensembl Protein Viewer:ENSP00000350171.4Re-query CCDS DB by Nucleotide ID:ENST00000357560Re-query CCDS DB by Protein ID:ENSP00000350171
Original member Current member NCBI NM_133173.3 NP_573419.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_133173.3Link to Protein Sequence:NP_573419.2Re-query CCDS DB by Nucleotide ID:NM_133173Re-query CCDS DB by Protein ID:NP_573419Link to BLAST:NP_573419.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_573419.2 486 O95704-1 486 100% 0 0

Chromosomal Locations for CCDS 4229.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 140558585 140558821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140560313 140560504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140560639 140560754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140561018 140561101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140561365 140561449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140561587 140561701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140561844 140561849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140562100 140562227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140562353 140562499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140562663 140562723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140563594 140563670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140563752 140563915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 140564197 140564245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1461 nt):
ATGCTGGGCAAGGATTACATGCTGGCCATCATTCTGGTCAACTGCGATGATGACTTGTGGGGGGACCACA
GTCTGGAGGTGGAGGCTGGCCTGCCTCCTGGCTGGAGGAAGATCCACGATGCTGCAGGTACTTACTACTG
GCATGTACCCAGCGGTAGCACCCAGTGGCAGCGCCCAACCTGGGAACTAGGAGATGCAGAGGACCCAGGC
ACGGGAACGGAGGGGATCTGGGGACTGCGGCCCCCCAAAGGGAGATCCTTCTCCAGCCTGGAGAGTTCAC
TGGACCGGAGTAACTCTCTGTCCTGGTATGGTGGGGAATCCTACATCCAGAGCATGGAGCCAGGGGCTAA
GTGCTTTGCAGTCCGCTCTCTGGGCTGGGTAGAGGTACCTGAAGAGGACCTGGCACCGGGGAAGAGCAGT
ATTGCAGTCAATAACTGTATCCAGCAGCTGGCCCAGACCCGCAGCCGGAGCCAGCCTCCAGATGGTGCCT
GGGGTGAGGGCCAGAACATGCTGATGATCCTGAAGAAGGATGCCATGAGCCTAGTGAATCCCCTGGACCA
CAGTCTGATCCACTGCCAGCCTCTGGTGCACATCCGTGTGTGGGGCGTGGGGAGCTCCAAGGGCCGTGAC
AGGGACTTCGCTTTTGTGGCAAGTGACAAAGATAGCTGTATGCTCAAGTGCCATGTGTTTTGCTGTGATG
TCCCTGCCAAGGCCATTGCCAGTGCCCTACATGGGCTTTGTGCCCAGATCTTGTCAGAGCGAGTAGAGGT
CAGTGGTGATGCCTCTTGCTGCTCCCCAGACCCCATCTCTCCTGAAGACCTGCCACGGCAAGTGGAGCTG
CTGGATGCGGTAAGCCAAGCTGCTCAGAAGTACGAGGCACTGTATATGGGGACACTGCCAGTCACCAAGG
CCATGGGCATGGATGTGCTGAACGAGGCCATTGGTACCCTCACCGCCAGGGGGGACCGGAATGCCTGGGT
CCCCACCATGCTCAGTGTGTCTGACTCTCTCATGACTGCACACCCCATTCAGGCAGAGGCCAGTACAGAG
GAGGAGCCATTGTGGCAGTGCCCTGTGCGCCTTGTGACATTTATTGGTGTTGGCCGCGACCCACACACCT
TTGGCCTCATCGCTGACCTGGGCCGTCAGAGCTTCCAGTGCGCAGCCTTCTGGTGCCAGCCCCATGCAGG
GGGACTCTCTGAAGCTGTGCAGGCTGCCTGTATGGTTCAGTACCAGAAGTGTCTTGTGGCCTCTGCAGCT
CGAGGCAAGGCCTGGGGTGCCCAGGCCCGTGCCCGCCTGCGGCTCAAGCGGACCAGCTCCATGGATTCCC
CAGGAGGTCCCCTGCCCCTCCCCCTGCTCAAAGGAGGGGTTGGCGGTGCAGGGGCAACCCCTCGAAAGCG
GGGTGTCTTCTCTTTTCTTGATGCCTTCCGGCTGAAACCCTCTCTGCTCCATATGCCCTAA

Translation (486 aa):
MLGKDYMLAIILVNCDDDLWGDHSLEVEAGLPPGWRKIHDAAGTYYWHVPSGSTQWQRPTWELGDAEDPG
TGTEGIWGLRPPKGRSFSSLESSLDRSNSLSWYGGESYIQSMEPGAKCFAVRSLGWVEVPEEDLAPGKSS
IAVNNCIQQLAQTRSRSQPPDGAWGEGQNMLMILKKDAMSLVNPLDHSLIHCQPLVHIRVWGVGSSKGRD
RDFAFVASDKDSCMLKCHVFCCDVPAKAIASALHGLCAQILSERVEVSGDASCCSPDPISPEDLPRQVEL
LDAVSQAAQKYEALYMGTLPVTKAMGMDVLNEAIGTLTARGDRNAWVPTMLSVSDSLMTAHPIQAEASTE
EEPLWQCPVRLVTFIGVGRDPHTFGLIADLGRQSFQCAAFWCQPHAGGLSEAVQAACMVQYQKCLVASAA
RGKAWGAQARARLRLKRTSSMDSPGGPLPLPLLKGGVGGAGATPRKRGVFSFLDAFRLKPSLLHMP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH