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Report for CCDS82259.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82259.1 Public Homo sapiens 18 CDH7 24 110 108 CCDS HistoryNCBI Gene:1005Re-query CCDS DB by CCDS ID:82259.1Re-query CCDS DB by GeneID:1005See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82259.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000536984.6 ENSP00000443030.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000536984.6Link to Ensembl Protein Viewer:ENSP00000443030.2Re-query CCDS DB by Nucleotide ID:ENST00000536984Re-query CCDS DB by Protein ID:ENSP00000443030
Original member Current member NCBI NM_001317214.3 NP_001304143.1 Accepted alive Link to Nucleotide Sequence:NM_001317214.3Link to Protein Sequence:NP_001304143.1Re-query CCDS DB by Nucleotide ID:NM_001317214Re-query CCDS DB by Protein ID:NP_001304143Link to BLAST:NP_001304143.1

Chromosomal Locations for CCDS 82259.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 65762843 65763052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65809704 65809998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65814485 65814604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65822081 65822248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65824644 65824831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65843812 65844065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65857816 65857952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65858925 65859046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65859708 65859825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65862666 65862946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1893 nt):
ATGAAGTTGGGCAAAGTGGAGTTCTGCCATTTTCTGCAGCTAATAGCTCTTTTCCTGTGTTTTTCTGGGA
TGAGTCAAGCAGAACTCTCAAGGTCCAGATCAAAGCCCTATTTCCAATCAGGGAGGTCCCGGACCAAGCG
CAGCTGGGTGTGGAATCAGTTCTTTGTGCTGGAGGAATACATGGGTTCAGACCCCCTCTATGTAGGAAAG
CTTCACTCTGATGTTGATAAAGGAGATGGTTCCATCAAATACATCTTGTCAGGCGAAGGGGCAAGTTCCA
TTTTCATTATTGATGAGAACACTGGGGATATTCATGCCACCAAGAGACTGGATCGTGAGGAGCAGGCCTA
CTACACGCTCCGAGCTCAAGCGCTGGATAGGCTCACCAACAAACCCGTGGAGCCCGAGTCGGAGTTTGTC
ATCAAAATTCAGGATATCAACGACAATGAACCCAAATTTTTGGATGGCCCATACACGGCAGGAGTTCCCG
AAATGTCTCCCGTGGGGACCTCAGTGGTACAAGTGACAGCGACGGATGCTGATGATCCTACATATGGCAA
CAGTGCCAGAGTGGTCTACAGTATTCTGCAAGGACAGCCGTACTTCTCAGTGGAGCCAAAGACAGGAGTC
ATCAAGACTGCCCTTCCAAACATGGATAGAGAGGCTAAAGACCAGTATTTGCTTGTCATTCAGGCAAAGG
ATATGGTTGGTCAAAATGGAGGACTGTCAGGAACTACATCAGTCACTGTGACCCTAACTGATGTCAACGA
TAATCCACCTCGCTTTCCTCGAAGGTCTTATCAATATAACGTCCCAGAGTCATTACCTGTAGCCTCAGTT
GTGGCCAGAATTAAAGCTGCTGATGCAGATATTGGAGCTAATGCTGAAATGGAGTACAAGATTGTGGATG
GTGATGGTTTGGGCATTTTTAAGATTTCTGTTGACAAAGAAACCCAGGAAGGAATCATTACTATACAGAA
GGAGCTGGATTTTGAAGCCAAAACAAGTTACACGCTACGGATAGAAGCTGCAAATAAAGATGCCGACCCT
CGCTTTCTGAGCTTGGGTCCGTTCAGTGACACGACAACTGTGAAGATAATTGTGGAAGATGTAGATGAGC
CCCCTGTGTTCTCTTCACCCTTGTACCCTATGGAGGTGTCGGAAGCTACCCAGGTTGGGAATATCATTGG
CACTGTAGCAGCTCATGACCCAGATTCTTCCAATAGCCCTGTGAGGTACTCAATTGACAGAAACACAGAC
TTGGAGAGATACTTCAATATTGATGCCAACAGTGGGGTCATCACAACTGCCAAGTCTTTGGATCGAGAGA
CAAATGCTATTCACAATATCACAGTCCTTGCAATGGAGAGCCAGAATCCATCTCAAGTAGGAAGAGGCTA
TGTGGCCATCACTATACTTGACATCAATGATAACGCCCCTGAATTTGCCATGGACTATGAGACCACCGTC
TGTGAAAATGCCCAGCCGGGGCAGGTTATCCAGAAAATCAGTGCTGTGGATAAAGATGAGCCATCCAATG
GACACCAGTTTTACTTCAGCTTAACAACGGATGCAACAAATAACCACAACTTTTCATTGAAAGATAACAA
AGACAACACAGCCTCAATACTGACCAGGAGAAACGGCTTCCGGAGACAGGAACAATCAGTTTACTATCTG
CCAATTTTCATTGTGGACAGTGGATCTCCCTCACTTAGCAGCACCAACACCCTCACCATCCGCGTGTGTG
ACTGTGATGCTGACGGCGTAGCCCAGACCTGCAATGCAGAGGCCTATGTCCTACCTGCTGGCCTCAGTAC
AGGAGCCCTGATAGCCATACTCGCCTGTGTCTTGACATTATTGGGTAGGTACTGTTTCCAGGGCTTGCTC
TGA

Translation (630 aa):
MKLGKVEFCHFLQLIALFLCFSGMSQAELSRSRSKPYFQSGRSRTKRSWVWNQFFVLEEYMGSDPLYVGK
LHSDVDKGDGSIKYILSGEGASSIFIIDENTGDIHATKRLDREEQAYYTLRAQALDRLTNKPVEPESEFV
IKIQDINDNEPKFLDGPYTAGVPEMSPVGTSVVQVTATDADDPTYGNSARVVYSILQGQPYFSVEPKTGV
IKTALPNMDREAKDQYLLVIQAKDMVGQNGGLSGTTSVTVTLTDVNDNPPRFPRRSYQYNVPESLPVASV
VARIKAADADIGANAEMEYKIVDGDGLGIFKISVDKETQEGIITIQKELDFEAKTSYTLRIEAANKDADP
RFLSLGPFSDTTTVKIIVEDVDEPPVFSSPLYPMEVSEATQVGNIIGTVAAHDPDSSNSPVRYSIDRNTD
LERYFNIDANSGVITTAKSLDRETNAIHNITVLAMESQNPSQVGRGYVAITILDINDNAPEFAMDYETTV
CENAQPGQVIQKISAVDKDEPSNGHQFYFSLTTDATNNHNFSLKDNKDNTASILTRRNGFRRQEQSVYYL
PIFIVDSGSPSLSSTNTLTIRVCDCDADGVAQTCNAEAYVLPAGLSTGALIAILACVLTLLGRYCFQGLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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