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Report for CCDS26641.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26641.1 Public Mus musculus 13 Ahrr 23 108 98 CCDS HistoryNCBI Gene:11624Re-query CCDS DB by CCDS ID:26641.1Re-query CCDS DB by GeneID:11624See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26641.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022059.13 ENSMUSP00000022059.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022059.13Link to Ensembl Protein Viewer:ENSMUSP00000022059.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022059Re-query CCDS DB by Protein ID:ENSMUSP00000022059
Original member Current member NCBI NM_009644.3 NP_033774.1 Accepted alive Link to Nucleotide Sequence:NM_009644.3Link to Protein Sequence:NP_033774.1Re-query CCDS DB by Nucleotide ID:NM_009644Re-query CCDS DB by Protein ID:NP_033774Link to BLAST:NP_033774.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033774.1 701 Q3U1U7-1 701 99.8573% 0 1

Chromosomal Locations for CCDS 26641.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 74213657 74214665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74215372 74215510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74215743 74215804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74220541 74220737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74222901 74223034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74224765 74224894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74229888 74229977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74257472 74257569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74277628 74277809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 74283037 74283101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2106 nt):
ATGATGATTCCGTCTGGAGAGTGTACATACGCCGGTAGGAAGAGAAGGAAGCCCATTCAGAAGCGGAGGC
TTACCATGGGAGCTGAGAAATCAAATCCTTCCAAACGGCACCGGGACCGCCTCAATACAGAGCTGGACCA
CCTGGCCAGCCTGCTGCCATTTTCACCTGATATCATCTCCAAGCTGGACAAGCTTTCTGTCCTGCGCCTC
AGCGTTAGCTACCTCAGGGTAAAGAGCTTCTTCCAAGCCTTGCAGGAGACATGTGTATGGTCAGCTCCAG
CCCTGTCACCTGAAGAACACTCATACAGAGGGTTCCCCGTGCAGGAAGGACGGCTGCTGCTGGAGTCTCT
CAATGGCTTCGCTCTGGTGGTGAGTGCCGAAGGGATGATCTTTTATGCATCGGCAACAATTGTGGACTAT
CTGGGCTTTCATCAGACAGATGTCATGCATCAAAACATTTATGACTACATCCATGTGGATGACCGGCAGG
ACTTCTGCAGACAGCTACACTGGGCCATGGACCCTCCTCAGGTGGTGTTTGGGCAGTCCCCACATGCTGA
CACAGACAATACTGTCCTGGGGAAGCTGCTCAGGGCCCAAGAAGGAGGCAAGGGCTTGCCCTCAGAGTAC
TCGGCCTTCTTGACACGCTGCTTCATTTGTCGTGTTCGCTGCCTGCTGGACAGCACCTCTGGCTTTCTGA
CCATGCAGTTCCAAGGAAAACTAAAATTCCTGTTTGGACAGAAGAAGAAGACACCATCAGGAACAGCCCT
GCCTCCTCGACTCTCATTGTTCTGCATTGTGGCACCAGTCTTGCCTTCTGTAACTGAGATGAAAATGAAA
AGCACATTCTTGAAGGCAAAGCACAGGGCAGACATTGTGGTTACGATGGACTCAAGGGCAAAAGCTGTTA
CAAGTCTATGTGAATCAGAATTGCATCCCAAACTCAATTACTTAGCAGGAAAGAGCAATGGAGAAAATGG
CATTTCACTGTTCAGGGGACAAACAGATAGGAGCCACTGGGCCCGGGCTCTAGCCAGATCTTCATGTCTG
TGCCTCAGGGGTGGTCCTGACCTGCTGGACCCCAAGGGGACTTCAGGGGACAGAGAAGAGGAGGACCAGA
AGCACATACTAAGGAGATCCCCTGGTGCCTGGGGGCAGAGGGAGATGCACAAGTACAGTTATGGTTTGGA
GACACCAGTACACTTGAGGCACCTGAACTGGAGCACAGAACAGCGAAGTCAGGAGAGCACTACCAAGCTG
ACTCGGCAGCCCAGTAAGAATGAGCCATCCACGTGTCTGGTGCCCCATGGTTCCTGTGTGCCCTACCCTG
GAAGCCAGGGCATGCTTAGTGCCAGCAACATGGCTTCTTTTAGAGATTCACTAGACCATCCCACTGGTGC
CTACTGCAGTCAGATGAACAGACCCTTGTCGGATATCCACCAGGGCCAGGTGGATCCTTCCACCTGCCAT
ATCTCCCAGGGCAGTCTGGGATCTAGGATCCCTCTGACTGGAATGCAGCGCTTCACAGCTCGGGGATTTT
CTACAGAGGATGCAAAATTACCCAGCCTGCCAGTGACCATAGGCACTCCATGCAACCCAGTATTGTCACT
GGATGTGCCAATCAAGATGGAGAATGAATCTGGGTCCCAGGATATAGTTGAAGCTAGCACAACTAGCTGT
TTGTGGCTGGGAACCAGCGACATGGCCAGAGGACATCTGGTTGGTTTCCCTGCCAGGATGCACCTGAAAA
CAGAGCCCGACTATAGGCAGCAGGCCTGTACCCCACACCTTGGTCATGGTATGCTGGGAACTAATCCCTA
CAGCAGAGATACTGTTGGATCCTGTAGGGAGCATGCTCCTCTTTACTCTGCACATTGCACCTGCCTGGAT
CCAGAGCCTCCTCATCACTTCTTCATGTGTAGCCACAGTGAGAGCCAGCACCCCTCATTGGACCAAGACT
GCAGAGCTCCTATTGTTAAGCGTGAGCCTCTGGACTCACCATCATGGGCTGCTCCTGGTCAGGTGACTGT
GCCCAGGATGTTCCCTAAGAGTGCCTCTAAAACTGTGATCCCATCCAAAGGCTCTGATGGAATTTTCCTA
CCCTAG

Translation (701 aa):
MMIPSGECTYAGRKRRKPIQKRRLTMGAEKSNPSKRHRDRLNTELDHLASLLPFSPDIISKLDKLSVLRL
SVSYLRVKSFFQALQETCVWSAPALSPEEHSYRGFPVQEGRLLLESLNGFALVVSAEGMIFYASATIVDY
LGFHQTDVMHQNIYDYIHVDDRQDFCRQLHWAMDPPQVVFGQSPHADTDNTVLGKLLRAQEGGKGLPSEY
SAFLTRCFICRVRCLLDSTSGFLTMQFQGKLKFLFGQKKKTPSGTALPPRLSLFCIVAPVLPSVTEMKMK
STFLKAKHRADIVVTMDSRAKAVTSLCESELHPKLNYLAGKSNGENGISLFRGQTDRSHWARALARSSCL
CLRGGPDLLDPKGTSGDREEEDQKHILRRSPGAWGQREMHKYSYGLETPVHLRHLNWSTEQRSQESTTKL
TRQPSKNEPSTCLVPHGSCVPYPGSQGMLSASNMASFRDSLDHPTGAYCSQMNRPLSDIHQGQVDPSTCH
ISQGSLGSRIPLTGMQRFTARGFSTEDAKLPSLPVTIGTPCNPVLSLDVPIKMENESGSQDIVEASTTSC
LWLGTSDMARGHLVGFPARMHLKTEPDYRQQACTPHLGHGMLGTNPYSRDTVGSCREHAPLYSAHCTCLD
PEPPHHFFMCSHSESQHPSLDQDCRAPIVKREPLDSPSWAAPGQVTVPRMFPKSASKTVIPSKGSDGIFL
P


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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