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Report for CCDS33986.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33986.1 Public Homo sapiens 4 CEP135 24 110 108 CCDS HistoryNCBI Gene:9662Re-query CCDS DB by CCDS ID:33986.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33986.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000257287.5 ENSP00000257287.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000257287.5Link to Ensembl Protein Viewer:ENSP00000257287.3Re-query CCDS DB by Nucleotide ID:ENST00000257287Re-query CCDS DB by Protein ID:ENSP00000257287
Original member Current member NCBI NM_025009.5 NP_079285.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025009.5Link to Protein Sequence:NP_079285.2Re-query CCDS DB by Nucleotide ID:NM_025009Re-query CCDS DB by Protein ID:NP_079285Link to BLAST:NP_079285.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079285.2 1140 Q66GS9-1 1140 100% 0 0

Chromosomal Locations for CCDS 33986.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 55952131 55952243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55953085 55953275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55954216 55954383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55957223 55957364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55959682 55959766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55964274 55964402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55965644 55965859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55969063 55969128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55971270 55971408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55974746 55974969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55980143 55980295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55981227 55981379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55985281 55985358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55991934 55992085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55999302 55999417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55999491 55999645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56008327 56008382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56009735 56009903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56011412 56011522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56011800 56011985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56017648 56017857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56019353 56019555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56020676 56020780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 56024501 56024603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3423 nt):
ATGACTACAGCTGTAGAGAGAAAGTATATTAATATTAGGAAAAGGCTGGATCAGCTGGGATACCGCCAGA
CTCTGACAGTGGAGTGTTTACCTTTGGTAGAAAAACTTTTCAGCGACTTAGTTCATACAACTGAGAGCCT
TCGGCAATCAAAATTATCTGCTGTGAAAGCTGAAAAAGAAAGTGCCAATTTTGATTTTGTTTTGGAACCC
TATAAACTTGAAAATGCAAGATTGAGTAGAGAAAATAATGAATTATACCTAGAGTTAATGAAACTGAGAG
AACATTCAGACCAACACGTTAAAGAGTTGAAAACTTCATTGAAGAAATGTGCACGTGAAACAGCTGATCT
GAAATTTCTGAATAACCAATATGCTCATAAACTCAAACTGTTGGAGAAAGAGAGCAAAGCTAAGAATGAA
AGAATTCAACAACTTCAAGAAAAGAATTTGCATGCTGTAGTACAAACTCCAGGTGGCAAGAAAAGAAGTA
TTGCTTTCAGGCGCCAGCGTATGCAAATTGATGAACCGGTTCCTCCCTCTGAAGTCAGTTCATATCCAGT
TCCTCAACCAGATGACCCTTACATTGCAGACCTCCTTCAAGTGGCTGATAACAGGATTCAAGAACTTCAA
CAGGAAGTCCACCAGCTACAAGAAAAGTTAGCAATGATGGAAAGTGGGGTGAGAGACTATAGCAAGCAGA
TTGAGCTAAGAGAACGAGAGATAGAACGACTGTCAGTTGCTTTGGATGGTGGTCGGTCCCCTGATGTCCT
TTCTCTGGAGTCTAGAAATAAAACCAATGAAAAGCTTATTGCTCATTTAAATATTCAGGTTGACTTTCTT
CAGCAAGCTAATAAAGACCTGGAGAAGCGTATACGAGAGCTTATGGAAACCAAGGAAACAGTGACATCTG
AAGTCGTTAATTTAAGTAACAAAAATGAAAAACTCTGCCAAGAATTAACTGAAATAGATCAGTTAGCACA
GCAGTTGGAAAGACATAAAGAAGAAGTGCTTGAGACTGCTGATAAAGAGCTTGGGGAAGCAAAGAAAGAG
ATTAAAAGAAAGCTCTCTGAAATGCAGGATCTTGAAGAAACAATGGCAAAACTTCAGCTGGAATTGAACT
TATGCCAGAAAGAAAAGGAGAGACTGAGTGATGAACTCCTTGTAAAATCAGACCTAGAAACTGTTGTTCA
TCAGCTTGAACAAGAAAAGCAAAGACTTAGCAAAAAAGTTGAAAGTTTTGCAGTTACAGAACGACAACTT
ACTCTGGAGGTTGAGAGGATGAGACTAGAACATGGAATAAAACGTCGAGACAGGTCACCTTCTCGTTTAG
ATACATTTCTGAAAGGTATAGAAGAAGAACGAGATTATTATAAGAAAGAGCTAGAGAGACTCCAACATAT
AATACAGCGAAGATCTTGCTCTACAAGTTATAGCGCACGTGAAAAAAGTTCAATATTTAGAACACCAGAA
AAGGGTGATTACAATTCAGAAATTCATCAGATCACAAGAGAAAGAGATGAACTTCAGCGTATGCTAGAAA
GATTTGAAAAATATATGGAAGATATACAGTCCAATGTTAAATTATTGACAGCAGAAAGAGATAAACTAAG
TGTCTTATATAATGAAGCTCAGGAAGAATTATCTGCCCTAAGAAAGGAATCCACCCAAACCACAGCACCC
CATAATATTGTTAGTCTTATGGAAAAGGAAAAAGAACTTGCGTTATCTGACTTAAGAAGAATTATGGCAG
AAAAGGAAGCTTTAAGAGAAAAATTAGAGCATATTGAAGAAGTGAGTCTTTTTGGAAAATCAGAATTAGA
GAAAACTATTGAACATTTGACATGTGTTAATCATCAGCTTGAAAGCGAAAAATATGAATTAAAGTCTAAA
GTGTTAATAATGAAAGAAACAATAGAGTCGTTAGAGAACAAATTAAAAGTCCAAGCTCAAAAATTTAGCC
ATGTGGCTGGTGACTCATCTCATCAGAAAACAGAGGTGAACTCACTTAGGATAGTGAATGAGCAGCTACA
GCGGTCAGTTGATGACTATCAGCACCGACTTTCCATAAAAAGAGGTGAACTTGAATCAGCCCAAGCACAA
ATTAAAATACTGGAGGAAAAGATAGATGAACTAAACCTTAAGATGACTTCACAGGATGAGGAGGCTCATG
TAATGAAAAAGACCATTGGTGTTATTGATAAAGAAAAAGACTTTCTCCAGGAGACTGTAGATGAGAAGAC
AGAAAAGATTGCAAATTTGCAAGAAAACCTAGCTAATAAAGAAAAAGCTGTTGCTCAAATGAAGATAATG
ATCTCAGAGTGTGAATCATCTGTGAACCAGCTGAAAGAAACATTGGTTAATCGAGATCGTGAGATAAACA
GCCTCCGGCGCCAGCTTGATGCAGCTCACAAAGAACTCGATGAAGTAGGAAGATCTAGAGAAATCGCTTT
TAAGGAAAACAGAAGACTGCAAGATGACCTGGCTACAATGGCAAGAGAAAATCAAGAAATCTCATTGGAA
TTGGAAGCAGCAGTGCAAGAAAAAGAAGAAATGAAGAGCAGAGTTCATAAATACATAACAGAGGTGTCAC
GATGGGAGAGCTTAATGGCTGCCAAGGAAAAAGAAAATCAAGATTTGTTAGATAGATTTCAGATGCTTCA
TAACCGTGCTGAAGACTGGGAGGTCAAAGCCCATCAAGCTGAGGGAGAAAGCAGCTCAGTTCGACTGGAA
CTTCTTTCTATTGACACTGAGAGGAGACATCTTCGAGAAAGAGTGGAGCTATTAGAAAAAGAAATTCAAG
AGCACATAAATGCCCATCATGCTTATGAATCTCAGATCTCATCAATGGCAAAAGCCATGTCTCGATTAGA
AGAAGAGCTGAGACATCAAGAAGATGAGAAAGCAACAGTATTAAATGACTTGTCATCTCTTAGAGAACTT
TGCATTAAACTTGATTCAGGCAAAGATATTATGACCCAGCAATTGAATTCGAAAAACCTTGAGTTTGAGA
GGGTTGTGGTGGAATTAGAAAATGTAAAGTCAGAGTCAGACCTACTGAAAAAACAACTTTCAAATGAGAG
ACATACAGTTAAAAACCTCGAATCATTGTTGGCTACAAACAGAGATAAAGAATTTCATTCTCACTTAACC
TCCCACGAGAAGGATACAGAAATCCAGCTACTTAAGGAGAAGTTAACCCTTTCTGAAAGCAAATTAACTA
GTCAAAGCCGGGAAAACACCATGCTTCGAGCTAAAGTGGCACAGTTACAAACAGATTATGATGCTCTGAA
AAGGCAGATCTCAACTGAAAGATACGAACGAGAACGAGCAATCCAAGAGATGCGTCGACATGGTCTTGCT
ACACCACCCCTTAGTTCCACTCTGAGGTCTCCTTCACATTCTCCTGAACATAGAAATGTGTAA

Translation (1140 aa):
MTTAVERKYINIRKRLDQLGYRQTLTVECLPLVEKLFSDLVHTTESLRQSKLSAVKAEKESANFDFVLEP
YKLENARLSRENNELYLELMKLREHSDQHVKELKTSLKKCARETADLKFLNNQYAHKLKLLEKESKAKNE
RIQQLQEKNLHAVVQTPGGKKRSIAFRRQRMQIDEPVPPSEVSSYPVPQPDDPYIADLLQVADNRIQELQ
QEVHQLQEKLAMMESGVRDYSKQIELREREIERLSVALDGGRSPDVLSLESRNKTNEKLIAHLNIQVDFL
QQANKDLEKRIRELMETKETVTSEVVNLSNKNEKLCQELTEIDQLAQQLERHKEEVLETADKELGEAKKE
IKRKLSEMQDLEETMAKLQLELNLCQKEKERLSDELLVKSDLETVVHQLEQEKQRLSKKVESFAVTERQL
TLEVERMRLEHGIKRRDRSPSRLDTFLKGIEEERDYYKKELERLQHIIQRRSCSTSYSAREKSSIFRTPE
KGDYNSEIHQITRERDELQRMLERFEKYMEDIQSNVKLLTAERDKLSVLYNEAQEELSALRKESTQTTAP
HNIVSLMEKEKELALSDLRRIMAEKEALREKLEHIEEVSLFGKSELEKTIEHLTCVNHQLESEKYELKSK
VLIMKETIESLENKLKVQAQKFSHVAGDSSHQKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQ
IKILEEKIDELNLKMTSQDEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIM
ISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISLE
LEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQMLHNRAEDWEVKAHQAEGESSSVRLE
LLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSRLEEELRHQEDEKATVLNDLSSLREL
CIKLDSGKDIMTQQLNSKNLEFERVVVELENVKSESDLLKKQLSNERHTVKNLESLLATNRDKEFHSHLT
SHEKDTEIQLLKEKLTLSESKLTSQSRENTMLRAKVAQLQTDYDALKRQISTERYERERAIQEMRRHGLA
TPPLSSTLRSPSHSPEHRNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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