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Report for CCDS11829.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11829.1 Public Homo sapiens 18 LPIN2 24 110 108 CCDS HistoryNCBI Gene:9663Re-query CCDS DB by CCDS ID:11829.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11829.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261596.9 ENSP00000261596.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000261596.9Link to Ensembl Protein Viewer:ENSP00000261596.4Re-query CCDS DB by Nucleotide ID:ENST00000261596Re-query CCDS DB by Protein ID:ENSP00000261596
Original member Current member EBI ENST00000677752.1 ENSP00000504857.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000677752.1Link to Ensembl Protein Viewer:ENSP00000504857.1Re-query CCDS DB by Nucleotide ID:ENST00000677752Re-query CCDS DB by Protein ID:ENSP00000504857
Original member Current member EBI ENST00000697040.1 ENSP00000513062.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000697040.1Link to Ensembl Protein Viewer:ENSP00000513062.1Re-query CCDS DB by Nucleotide ID:ENST00000697040Re-query CCDS DB by Protein ID:ENSP00000513062
Original member Current member NCBI NM_001375808.2 NP_001362737.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001375808.2Link to Protein Sequence:NP_001362737.1Re-query CCDS DB by Nucleotide ID:NM_001375808Re-query CCDS DB by Protein ID:NP_001362737Link to BLAST:NP_001362737.1
Original member Current member NCBI NM_001375809.1 NP_001362738.1 Accepted alive Link to Nucleotide Sequence:NM_001375809.1Link to Protein Sequence:NP_001362738.1Re-query CCDS DB by Nucleotide ID:NM_001375809Re-query CCDS DB by Protein ID:NP_001362738Link to BLAST:NP_001362738.1
Original member Current member NCBI NM_014646.2 NP_055461.1 Accepted alive Link to Nucleotide Sequence:NM_014646.2Link to Protein Sequence:NP_055461.1Re-query CCDS DB by Nucleotide ID:NM_014646Re-query CCDS DB by Protein ID:NP_055461Link to BLAST:NP_055461.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001362737.1 896 Q92539 896 100% 0 0
NP_001362738.1 896 Q92539 896 100% 0 0
NP_055461.1 896 Q92539 896 100% 0 0

Chromosomal Locations for CCDS 11829.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 2920293 2920437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2920778 2920881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2921533 2921647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2922047 2922199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2923775 2923861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2924398 2924546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2925224 2925368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2926723 2926805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2927722 2927811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2928591 2928660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2929065 2929158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2931256 2931443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2934351 2934450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2937692 2938037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2939480 2939603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2940605 2940712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2951055 2951356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2954504 2954599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 2960649 2960840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2691 nt):
ATGAATTATGTGGGACAGCTGGCTGGGCAGGTGATTGTCACTGTGAAGGAACTCTACAAGGGCATTAACC
AGGCCACCCTCTCTGGGTGCATTGATGTCATCGTGGTACAGCAGCAGGATGGCAGCTATCAGTGTTCACC
TTTTCACGTTCGGTTTGGAAAGCTGGGAGTCCTGAGATCCAAAGAGAAAGTGATTGATATAGAAATCAAC
GGCAGTGCAGTGGATCTTCACATGAAGTTGGGTGATAACGGAGAAGCTTTCTTTGTTGAGGAGACTGAAG
AAGAATATGAAAAGCTTCCTGCTTACCTTGCCACCTCACCAATTCCTACTGAAGATCAGTTCTTTAAAGA
TATTGACACCCCTTTGGTGAAATCGGGTGGAGATGAAACACCATCTCAGAGTTCAGACATCTCACACGTC
TTGGAAACAGAGACAATTTTTACTCCAAGTTCTGTGAAAAAGAAAAAACGAAGGAGAAAGAAATACAAAC
AGGACAGTAAGAAGGAAGAGCAGGCCGCATCTGCTGCTGCAGAAGACACATGTGATGTAGGCGTGAGCTC
CGATGATGACAAGGGGGCCCAGGCAGCACGAGGATCTTCAAATGCTTCCTTGAAAGAAGAAGAATGTAAA
GAGCCTTTGCTCTTCCATTCTGGGGATCATTACCCCTTATCTGATGGAGATTGGTCCCCTTTAGAGACCA
CCTATCCCCAGACAGCGTGTCCTAAGAGTGATTCAGAGCTGGAGGTGAAACCTGCGGAGAGCCTGCTCAG
ATCAGAGTCTCACATGGAGTGGACGTGGGGCGGATTCCCAGAGTCCACCAAGGTCAGCAAAAGAGAACGA
TCTGACCATCATCCTAGGACAGCTACAATTACACCATCAGAAAATACTCATTTTCGGGTAATTCCCAGTG
AGGACAACCTCATCAGTGAAGTTGAGAAGGATGCTTCCATGGAAGACACTGTCTGTACCATAGTGAAGCC
CAAACCCAGAGCCCTGGGTACACAGATGAGCGACCCAACATCTGTGGCAGAGCTTCTCGAACCTCCTCTT
GAGAGTACTCAGATTTCATCTATGTTAGATGCTGACCACCTTCCCAACGCAGCCTTAGCGGAGGCGCCCT
CAGAATCCAAACCGGCAGCTAAAGTAGACTCGCCGTCAAAGAAGAAAGGTGTTCACAAAAGAAGCCAACA
CCAGGGACCTGATGATATTTACCTTGATGACTTAAAGGGTCTAGAACCTGAAGTTGCAGCTCTTTATTTC
CCTAAAAGTGAATCGGAGCCCGGTTCCAGGCAGTGGCCCGAGTCTGACACACTCTCTGGCTCCCAGTCCC
CACAGTCCGTGGGAAGCGCAGCTGCAGATAGCGGCACCGAGTGCCTCTCAGATTCTGCCATGGACTTGCC
TGACGTTACCCTCTCCCTTTGCGGGGGCCTCAGTGAAAATGGAGAAATTTCAAAAGAAAAATTCATGGAG
CATATCATTACTTATCACGAATTTGCAGAAAACCCTGGACTTATAGACAATCCTAACCTTGTAATAAGGA
TATATAATCGTTACTATAACTGGGCTTTGGCAGCTCCCATGATCCTTAGCTTGCAAGTATTCCAGAAGAG
CTTGCCTAAGGCCACAGTTGAGTCCTGGGTGAAAGACAAGATGCCAAAGAAATCTGGTCGCTGGTGGTTT
TGGCGAAAGAGAGAAAGCATGACCAAACAGCTGCCAGAATCCAAGGAGGGAAAATCTGAGGCACCGCCAG
CCAGTGACCTGCCATCCAGCTCCAAGGAGCCGGCCGGTGCCAGGCCGGCCGAGAATGACTCCTCGAGTGA
CGAGGGATCACAGGAGCTCGAAGAATCCATCACAGTGGACCCCATCCCCACAGAGCCCCTGAGCCACGGC
AGCACAACTTCATATAAGAAGTCTCTCCGCCTCTCCTCAGACCAGATCGCAAAACTGAAGCTCCACGATG
GCCCAAATGATGTTGTGTTTAGTATTACAACCCAGTATCAAGGCACCTGTCGCTGTGCAGGGACCATTTA
CCTGTGGAACTGGAATGACAAGATCATCATTTCTGATATTGATGGGACAATAACCAAGTCGGATGCTTTG
GGACAGATTCTCCCACAGCTGGGCAAAGACTGGACCCACCAGGGTATAGCAAAGCTCTACCATTCCATCA
ATGAGAATGGCTACAAGTTTCTGTACTGCTCGGCTCGTGCCATCGGCATGGCCGACATGACCCGTGGCTA
CCTGCACTGGGTCAATGACAAGGGCACAATCTTGCCCCGGGGCCCCCTGATGCTGTCCCCCAGCAGCTTG
TTCTCCGCCTTCCACAGAGAAGTGATAGAAAAGAAACCAGAGAAGTTCAAAATTGAGTGTCTAAATGATA
TCAAGAATCTGTTTGCCCCGTCTAAGCAGCCCTTCTATGCTGCCTTTGGAAACCGTCCAAATGATGTCTA
TGCCTACACACAAGTTGGAGTTCCAGACTGTAGAATATTCACCGTGAACCCCAAGGGTGAATTAATACAA
GAAAGAACCAAAGGAAACAAGTCATCGTATCACAGGCTGAGTGAGCTCGTGGAGCATGTGTTCCCCCTTC
TCAGTAAGGAGCAGAATTCCGCTTTTCCCTGCCCGGAGTTCAGCTCCTTCTGCTACTGGCGAGACCCGAT
CCCTGAAGTGGACCTGGATGACCTGTCTTGA

Translation (896 aa):
MNYVGQLAGQVIVTVKELYKGINQATLSGCIDVIVVQQQDGSYQCSPFHVRFGKLGVLRSKEKVIDIEIN
GSAVDLHMKLGDNGEAFFVEETEEEYEKLPAYLATSPIPTEDQFFKDIDTPLVKSGGDETPSQSSDISHV
LETETIFTPSSVKKKKRRRKKYKQDSKKEEQAASAAAEDTCDVGVSSDDDKGAQAARGSSNASLKEEECK
EPLLFHSGDHYPLSDGDWSPLETTYPQTACPKSDSELEVKPAESLLRSESHMEWTWGGFPESTKVSKRER
SDHHPRTATITPSENTHFRVIPSEDNLISEVEKDASMEDTVCTIVKPKPRALGTQMSDPTSVAELLEPPL
ESTQISSMLDADHLPNAALAEAPSESKPAAKVDSPSKKKGVHKRSQHQGPDDIYLDDLKGLEPEVAALYF
PKSESEPGSRQWPESDTLSGSQSPQSVGSAAADSGTECLSDSAMDLPDVTLSLCGGLSENGEISKEKFME
HIITYHEFAENPGLIDNPNLVIRIYNRYYNWALAAPMILSLQVFQKSLPKATVESWVKDKMPKKSGRWWF
WRKRESMTKQLPESKEGKSEAPPASDLPSSSKEPAGARPAENDSSSDEGSQELEESITVDPIPTEPLSHG
STTSYKKSLRLSSDQIAKLKLHDGPNDVVFSITTQYQGTCRCAGTIYLWNWNDKIIISDIDGTITKSDAL
GQILPQLGKDWTHQGIAKLYHSINENGYKFLYCSARAIGMADMTRGYLHWVNDKGTILPRGPLMLSPSSL
FSAFHREVIEKKPEKFKIECLNDIKNLFAPSKQPFYAAFGNRPNDVYAYTQVGVPDCRIFTVNPKGELIQ
ERTKGNKSSYHRLSELVEHVFPLLSKEQNSAFPCPEFSSFCYWRDPIPEVDLDDLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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