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Report for CCDS14830.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14830.1 Public Mus musculus 1 Rdh10 23 108 98 CCDS HistoryNCBI Gene:98711Re-query CCDS DB by CCDS ID:14830.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 14830.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027053.7 ENSMUSP00000027053.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027053.7Link to Ensembl Protein Viewer:ENSMUSP00000027053.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027053Re-query CCDS DB by Protein ID:ENSMUSP00000027053
Original member Current member NCBI NM_133832.3 NP_598593.1 Accepted alive Link to Nucleotide Sequence:NM_133832.3Link to Protein Sequence:NP_598593.1Re-query CCDS DB by Nucleotide ID:NM_133832Re-query CCDS DB by Protein ID:NP_598593Link to BLAST:NP_598593.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598593.1 341 Q8VCH7 341 100% 0 0

Chromosomal Locations for CCDS 14830.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 16106018 16106306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16107795 16108030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16128165 16128263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16129196 16129341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16131075 16131206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 16131294 16131417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1026 nt):
ATGAACATCGTAGTGGAGTTCTTCGTGGTCACTTTCAAAGTGCTGTGGGCGTTCGTGCTGGCCGCGGCGC
GCTGGCTGGTGCGGCCCAAGGAGAAGAGCGTGGCCGGCCAGGTGTGCCTCATCACGGGCGCGGGCAGCGG
CCTGGGCCGCCTCTTTGCTCTCGAGTTCGCCCGGCGCCGGGCGCTGCTGGTTCTCTGGGACATCAACACG
CAGAGCAATGAGGAGACCGCAGGCATGGTTCGCCACATCTACCGGGACCTGGAGGCGGCCGACGCTGCTG
CTCTGCAAGCTGGAAAAGGTGAGGAGGAAATCCTGCCCCCGTGTAACTTACAGGTTTTTACCTACACTTG
TGACGTGGGGAAGAGAGAGAATGTCTACCTGACAGCTGAAAGGGTCCGCAAGGAGGTTGGCGAGGTCTCG
GTCCTGGTCAATAATGCTGGTGTGGTTTCTGGACATCACCTTCTGGAATGTCCTGATGAGCTCATTGAAA
GAACCATGATGGTCAACTGCCACGCACACTTCTGGACCACTAAGGCCTTTCTTCCAACGATGCTAGAGAT
TAATCATGGCCACATTGTGACGGTCGCGAGCTCCCTGGGACTGTTCAGCACTGCTGGAGTTGAGGATTAC
TGTGCCAGTAAATTTGGAGTTGTGGGTTTTCACGAGTCTCTGAGCCATGAGCTAAAGGCTGCTGAAAAGG
ATGGAATTAAAACAACTCTGGTTTGCCCTTACCTTGTAGACACGGGCATGTTCAGAGGCTGCCGAATCAG
AAAAGAAATTGAGCCCTTTTTGCCCCCCTTGAAGCCTGATTACTGTGTGAAGCAGGCTATGAGGGCCATC
CTCACTGACCAGCCCATGGTCTGCACCCCCCGCCTCATGTACATCGTGACATTCATGAAGAGCATCCTTC
CTTTTGAAGCCGTCGTGTGCATGTATCGATTTCTAGGAGCGGACAAGTGTATGTATCCCTTTATTGCTCA
AAGAAAACAAGCCACAAACAACAATGAAGCAAAAAATGGAATCTAA

Translation (341 aa):
MNIVVEFFVVTFKVLWAFVLAAARWLVRPKEKSVAGQVCLITGAGSGLGRLFALEFARRRALLVLWDINT
QSNEETAGMVRHIYRDLEAADAAALQAGKGEEEILPPCNLQVFTYTCDVGKRENVYLTAERVRKEVGEVS
VLVNNAGVVSGHHLLECPDELIERTMMVNCHAHFWTTKAFLPTMLEINHGHIVTVASSLGLFSTAGVEDY
CASKFGVVGFHESLSHELKAAEKDGIKTTLVCPYLVDTGMFRGCRIRKEIEPFLPPLKPDYCVKQAMRAI
LTDQPMVCTPRLMYIVTFMKSILPFEAVVCMYRFLGADKCMYPFIAQRKQATNNNEAKNGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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