NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, December 17, 2024, starting at 8:00 a.m. EST for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS12963.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12963.1 Public Homo sapiens 19 ZNF552 24 110 108 CCDS HistoryNCBI Gene:79818Re-query CCDS DB by CCDS ID:12963.1Re-query CCDS DB by GeneID:79818See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12963.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000391701.1 ENSP00000375582.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000391701.1Link to Ensembl Protein Viewer:ENSP00000375582.1Re-query CCDS DB by Nucleotide ID:ENST00000391701Re-query CCDS DB by Protein ID:ENSP00000375582
Original member Current member NCBI NM_024762.3 NP_079038.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024762.3Link to Protein Sequence:NP_079038.2Re-query CCDS DB by Nucleotide ID:NM_024762Re-query CCDS DB by Protein ID:NP_079038Link to BLAST:NP_079038.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079038.2 407 Q9H707 407 100% 0 0

Chromosomal Locations for CCDS 12963.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 57808040 57809103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57813294 57813420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57814711 57814743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1224 nt):
ATGGCGGCGGCCGCGCTAAGGTTCCCCGTTCAGGGCACAGTGACTTTTGAAGACGTGGCTGTGAAATTTA
CCCAGGAGGAATGGAATCTCCTTAGTGAGGCTCAGAGATGCCTGTACCGTGATGTGACGCTGGAGAACCT
GGCACTTATGTCCTCCCTGGGTTGTTGGTGTGGAGTGGAAGATGAGGCGGCACCTTCTAAGCAGAGTATT
TATATACAAAGAGAGACTCAGGTCAGGACTCCTATGGCAGGTGTGTCTCCCAAGAAGGCCCACCCCTGTG
AGATGTGTGGCCCGATCTTGGGAGACATTTTGCATGTGGCAGATCATCAGGGAACACATCACAAGCAGAA
ACTGCACAGGTGTGAGGCCTGGGGGAATAAATTGTATGACAGTGGAAACTTTCATCAGCACCAGAATGAG
CACATTGGAGAGAAACCCTACAGAGGGAGTGTTGAGGAGGCGTTGTTTGCGAAGAGGTGTAAGTTGCATG
TGTCAGGGGAGTCATCTGTCTTCAGTGAGAGTGGGAAAGACTTTTTGCTCAGGTCAGGATTACTCCAGCA
AGAGGCCACTCACACTGGGAAGTCAAACAGCAAAACTGAGTGTGTGTCTCTGTTTCATGGGGGAAAAAGC
CATTACAGCTGTGGAGGATGCATGAAACATTTTAGCACCAAAGATATACTCAGTCAGCACGAGAGACTGC
TCCCTACAGAAGAACCTTCTGTGTGGTGTGAATGTGGGAAATCCTCTAGCAAATATGACAGCTTCAGTAA
TCATCAAGGAGTTCACACTAGAGAAAAACCTTATACGTGTGGGATATGTGGGAAATTATTTAACAGTAAG
TCCCACCTCCTTGTACACCAGAGAATTCACACTGGAGAGAAGCCATATGAGTGTGAGGTTTGTCAGAAAT
TTTTTAGGCACAAGTACCACCTCATTGCACACCAGAGAGTTCACACTGGAGAAAGGCCATATGAATGCAG
TGATTGTGGGAAGTCATTTACCCACAGCTCTACATTCCGTGTTCATAAGAGAGTTCACACTGGTCAGAAG
CCTTATGAGTGCAGTGAATGTGGGAAATCTTTTGCCGAAAGCTCCAGTCTCACTAAACACAGGAGAGTTC
ACACTGGAGAAAAGCCTTACGGGTGCAGTGAATGTGAAAAAAAATTTAGGCAAATCTCTTCACTTCGTCA
TCATCAGAGAGTTCACAAAAGAAAGGGCTTATGA

Translation (407 aa):
MAAAALRFPVQGTVTFEDVAVKFTQEEWNLLSEAQRCLYRDVTLENLALMSSLGCWCGVEDEAAPSKQSI
YIQRETQVRTPMAGVSPKKAHPCEMCGPILGDILHVADHQGTHHKQKLHRCEAWGNKLYDSGNFHQHQNE
HIGEKPYRGSVEEALFAKRCKLHVSGESSVFSESGKDFLLRSGLLQQEATHTGKSNSKTECVSLFHGGKS
HYSCGGCMKHFSTKDILSQHERLLPTEEPSVWCECGKSSSKYDSFSNHQGVHTREKPYTCGICGKLFNSK
SHLLVHQRIHTGEKPYECEVCQKFFRHKYHLIAHQRVHTGERPYECSDCGKSFTHSSTFRVHKRVHTGQK
PYECSECGKSFAESSSLTKHRRVHTGEKPYGCSECEKKFRQISSLRHHQRVHKRKGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH