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Report for CCDS20512.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20512.1 Public Mus musculus 6 Clec4n 23 108 98 CCDS HistoryNCBI Gene:56620Re-query CCDS DB by CCDS ID:20512.1Re-query CCDS DB by GeneID:56620See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20512.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024118.10 ENSMUSP00000024118.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024118.10Link to Ensembl Protein Viewer:ENSMUSP00000024118.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000024118Re-query CCDS DB by Protein ID:ENSMUSP00000024118
Original member Current member NCBI NM_020001.2 NP_064385.1 Accepted alive Link to Nucleotide Sequence:NM_020001.2Link to Protein Sequence:NP_064385.1Re-query CCDS DB by Nucleotide ID:NM_020001Re-query CCDS DB by Protein ID:NP_064385Link to BLAST:NP_064385.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064385.1 209 Q9JKF4-1 209 100% 0 0

Chromosomal Locations for CCDS 20512.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 123230019 123230043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123230504 123230593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123232093 123232194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123235444 123235595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123244478 123244593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123246441 123246585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (630 nt):
ATGGTGCAGGAAAGACAATCCCAAGGGAAGGGAGTCTGCTGGACCCTGAGACTCTGGTCAGCTGCTGTGA
TTTCCATGTTACTCTTGAGTACCTGTTTCATTGCGAGCTGTGTGGTGACTTACCAATTTATTATGGACCA
GCCCAGTAGAAGACTATATGAACTTCACACATACCATTCCAGTCTCACCTGCTTCAGTGAAGGGACTATG
GTGTCAGAAAAAATGTGGGGATGCTGCCCAAATCACTGGAAGTCATTTGGCTCCAGCTGCTACCTCATTT
CTACCAAGGAGAACTTCTGGAGCACCAGTGAGCAGAACTGTGTTCAGATGGGGGCTCATCTGGTGGTGAT
CAATACTGAAGCGGAGCAGAATTTCATCACCCAGCAGCTGAATGAGTCACTTTCTTACTTCCTGGGTCTT
TCGGATCCACAAGGTAATGGCAAATGGCAATGGATCGATGATACTCCTTTCAGTCAAAATGTCAGGTTCT
GGCACCCCCATGAACCCAATCTTCCAGAAGAGCGGTGTGTTTCAATAGTTTACTGGAATCCTTCGAAATG
GGGCTGGAATGATGTTTTCTGTGATAGTAAACACAATTCAATATGTGAAATGAAGAAGATTTACCTATGA

Translation (209 aa):
MVQERQSQGKGVCWTLRLWSAAVISMLLLSTCFIASCVVTYQFIMDQPSRRLYELHTYHSSLTCFSEGTM
VSEKMWGCCPNHWKSFGSSCYLISTKENFWSTSEQNCVQMGAHLVVINTEAEQNFITQQLNESLSYFLGL
SDPQGNGKWQWIDDTPFSQNVRFWHPHEPNLPEERCVSIVYWNPSKWGWNDVFCDSKHNSICEMKKIYL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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