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Report for CCDS30490.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30490.1 Public Mus musculus X Magea8 23 108 98 CCDS HistoryNCBI Gene:17144Re-query CCDS DB by CCDS ID:30490.1Re-query CCDS DB by GeneID:17144See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 30490.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070141.6 ENSMUSP00000066341.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070141.6Link to Ensembl Protein Viewer:ENSMUSP00000066341.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000070141Re-query CCDS DB by Protein ID:ENSMUSP00000066341
Original member Current member NCBI NM_020020.4 NP_064404.1 Accepted alive Link to Nucleotide Sequence:NM_020020.4Link to Protein Sequence:NP_064404.1Re-query CCDS DB by Nucleotide ID:NM_020020Re-query CCDS DB by Protein ID:NP_064404Link to BLAST:NP_064404.1

Chromosomal Locations for CCDS 30490.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 154986149 154987111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGGCTGACTCCCATAACATCCAATACTGCAACCTCCAAGAGAGTGCTCAGGCCCAACAGGAATTAGACA
ATGACCAGGAGACCATGGTGACATCACAGGAGGAGGAAGTTACCACCACCTCAAATAAAGTGTATGGTAG
TGGAATACCAAGTCCTCCCCAGAGTCCTCAGAGAGCCTACTCTCCCTGTGTGGCACTGGCCTCCATCCCT
GATAGCCCATCTGAGGAAGCTTCCATCAAAGGATCAGAGGGCCTGGAAGACCCACTTTATTTGTTGCACA
ATGCACAGAACACAAAGGTGTATGACTTGGTGGACTTTCTGGTTTTAAACTATGAAATGAAGGCATTTCC
TACCAAAGCAGAAATGTTGGAAAGTATTGGTAGAGAGTATGAGGAGTACTACCCTCTGATCTTTAGTGAG
GCCTCTGAGTGCTTGAAGATGGTCTTTGGCCTTGACATGGTAGAAGTGGACCCCTTTGTCCACTCCTATA
TGCTTGTCACTGCCCTGGGGATCACCTATGATGGCATGATGACTGATGTCCAGGGTATGCCCAAGACAGG
TATCCTCATAGCTGTACTGAGTGTCATTTTCATGAAGGGAAACTATGTCAGTGAGGAGATTATCTGGGAA
ATGCTGAATAACATAGGATTGTGTGGTGGGAGGAATCCTTACATACATAAAGACCCCAGGAAGCTCATCT
CTGAGGAGTTTGTGCAGGAAGGGTACCTGGAATACAGGCAGGTGCCCAATAGTGATCCTCCTAGCTATGG
GTTCCTGTGGGGCCCAAGGGCTTTTGCAGAAACCAGCAAAATGAAAGTCTTACAGTTTTTTGCCAGCATT
AATAAGACTCATCCCAGAGCCTACCCTGAAAAGTATGCAGAGGCATTGCAAGATGAGATAGACAGGACCA
AGGCGTGGATCTTGAACAGATGCTCCAACTTCTCTGACCTGCTTACATTCTAG

Translation (320 aa):
MADSHNIQYCNLQESAQAQQELDNDQETMVTSQEEEVTTTSNKVYGSGIPSPPQSPQRAYSPCVALASIP
DSPSEEASIKGSEGLEDPLYLLHNAQNTKVYDLVDFLVLNYEMKAFPTKAEMLESIGREYEEYYPLIFSE
ASECLKMVFGLDMVEVDPFVHSYMLVTALGITYDGMMTDVQGMPKTGILIAVLSVIFMKGNYVSEEIIWE
MLNNIGLCGGRNPYIHKDPRKLISEEFVQEGYLEYRQVPNSDPPSYGFLWGPRAFAETSKMKVLQFFASI
NKTHPRAYPEKYAEALQDEIDRTKAWILNRCSNFSDLLTF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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  VEGA Genome Browser

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