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Report for CCDS71123.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71123.1 Public Mus musculus 2 Zscan29 23 108 98 CCDS HistoryNCBI Gene:99334Re-query CCDS DB by CCDS ID:71123.1See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 71123.1
The exon combination of this CCDS representation is inferred due to a lack of full-length transcript support for this gene in mouse. This representation is supported by tiling of partial mouse transcripts and by full-length orthologous human alignments (e.g., AK122788.1 or AF525399.1).

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 71123.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110661.8 ENSMUSP00000106289.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110661.8Link to Ensembl Protein Viewer:ENSMUSP00000106289.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110661Re-query CCDS DB by Protein ID:ENSMUSP00000106289
Original member NCBI NM_001290819.1 NP_001277748.1 Updated not alive Link to Nucleotide Sequence:NM_001290819.1Link to Protein Sequence:NP_001277748.1Re-query CCDS DB by Nucleotide ID:NM_001290819Re-query CCDS DB by Protein ID:NP_001277748
Current member NCBI NM_001290819.2 NP_001277748.1 Accepted alive Link to Nucleotide Sequence:NM_001290819.2Link to Protein Sequence:NP_001277748.1Re-query CCDS DB by Nucleotide ID:NM_001290819Re-query CCDS DB by Protein ID:NP_001277748Link to BLAST:NP_001277748.1

Chromosomal Locations for CCDS 71123.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 121160696 121161549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121163747 121164202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121166044 121166718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121169199 121169403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 121169810 121170124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2505 nt):
ATGGCCAAACCCACTCGGAGAGGAAATGGCACAAGCTCTGAAAGCTTACGACAGCGCTTCAGAAGATTCC
ATTACCAGGAGGTGGCTGGGCCCCGGGAGGCTTTCAGCCAACTATGGGAACTTTGCTGTCGGTGGCTAAG
GCCGGAGGTGCGGACCAAGGAGCAGATTGTAGAATTGTTGGTGCTAGAGCAATTCCTGACTGTGCTACCT
GTGGAGATCCAGAACTGGGTACAGAAGCAATGTCCAGAAAATGGAGAGGAGGCGGTGACACTGGTGGAAG
ATTTAGAAAGAGAGTCTGGAAGACCTGGACATTCGGTCACAGTCTCTGTGAAGGGGCAGGAAATGCACTC
GGAGAAGATGACACCCCTGAAATCATCACAGGAGTTATTAAGTGTTCTGCAGGAGTCAGTGGAACCCCAG
CCCAAGGGTGTATCCAAGAAAGAGAGGGCAAGAAGGCCAGCCCTGAGACTACAGGAGCAGATGAACCCAA
AGGAGAATCTCAGACCTTTTCAAAGGAGCGGATTTCCATTTCCTAAACCCAATGTGGTGTCCAGGTTGGA
TCAAGGAGAGCCATGGATCTCAGATCTGCTTAGCTCCAAGGAGAAGGATGTCCCAAAAGGCAACACAGGA
ACCAGTCTATTACCATCCAAGAGAGAGAGAACCTGCTGGGTGGAACAGGGTCACTGGGTATTTGATGATG
AGAAGGTGGTGGGTGTGCACTGGGGCTACAAAGAGACTAGAACACTCCTTGCAATTCTCAGTCAGACTGA
ATTTTACGAAGCGCTCCGAAACTGTCACAGGAACAGCCAAGTGTATGGGGCTGTAGCTGGGAGGCTTCGT
GAATATGGTTTCCTCCGGACTCTGGAACAGTGTCGGACCAAGTTCAAAGGCCTTCAGAAGAGCTACAGGA
AGGTCAAGAGTGGTCATCCACCCGACACCTGCCCCTTCTTTGAAGAGATGGAAGCCCTGATGAGTGCCCA
GGTCATTTCATTGCCCATTAATGGCCTGGAAGAGGCAGCCTCCCATTCTGCCCAGGCAGGCAGTGATGCT
GAGACGGAGAAGCCAGGGCAGAGGGACTGGCAGCATGAAGATGGAGAGGAGGCTATAGCTGAAAGGTCAG
ACAGTGATGACCCGGAGGCAACCCCCCAGGACCCTGACAACCCACCTGCACCTGTCCTGTTCCGAAGCCC
AAGTGGTGTACACTGGGGCTATGAAGAAACCAAGACTTACCTTGCAATTCTCAGTGAGACTCAGTTCTAC
GAAGCCCTCCAAAACTGTCACCGCAACAGCCAGTTATATGGAACAGTTGCTGAGAGACTGTGGGAATATG
GCTTCCTTAGAACCCCAGAGCAATGTCGTACCAAATTTAAAAGCCTACAAACCAGCTATCGGAAAGTCAA
GAATGGCCAAGCACTAGAAACCTGCCCCTTCTTTGAAGAAATGGATGCTTTAGTGAGTGCCCAAGTTGCT
GCCCCACCTAGTGATGACCAGGAGAAAGAAACAGTTTCTTGTTGCCTCCAGAGAACCAGTGAGGCTGAAC
CTGAGAAGCAAGATGAGGACACAGAAGAAGATTCAGATGATGAAGATGATACTGAAATACCTCCAGAGGC
TGTTATAACCCGTGCCCCAGTCTTATTCCAGAGCCCCAGTGGTTTCGAGGCTGGATTTGAAAATGAAGAA
AATTCAAAACGGGATATTTCTGAGGAAGTACAGCTGCATAGAACATTACTTGCAAGGTCTGAAAGGAAAA
TTTCCCATCATGTTAATCAAAGTAAAGCGAGTAAGAATAAATGCTCATCAGAAAGCCAGTGGGAAAAGAC
TCAAAGAGAGGAACAAAGACAACTAGCATTCCCAGAGAAGAATATAGGTAAAGTCCTGACCTATCAGAGG
CCAGGCTTGGAAGACAGACCTTATAAATATGTCAAGTATGGCAAAAGCTCTGGTTCAAACTCCCATCTCA
GGTATCCGGTCTCCCATGAGGTAGAGAACCCATATAAATGTGCTGACTGTGGGAAAAGCTTCAGTCGGAG
TGCACGCCTCATCAGACACCAAAGAATCCACACCGGAGAAAAACCGTATAAGTGTCTTGACTGTGGGAAA
GGTTTCCGTGACAGTTCCAATTTCATTACCCATCGGAGAATCCACACAGGAGAAAAACCGTATCAGTGTG
ATGAATGTGGAAAACGCTTCAACCAGAGCTCAAGCCTTATAATTCACCAGAGAACCCACACAGGAGAAAA
GCCTTATCAGTGTGAAGAGTGTGGGAAAAGCTTCAATAACAGTTCTCATTTCAATGCACACAGGAGGATA
CACACAGGAGAGAGACCCCATGTGTGTCCTGACTGTGGTAAGAGTTTTAGTAAGAGTTCTGACTTGCATG
CACATCACAGAACCCACACAGGAAAGAAACCTTATGGGTGCCATGACTGTGGCAAGTGCTTCAGTAAGAG
CTCTGCCCTTAGTAAACACCGAGAGACTCATACTCGAGAAAAGCTGCTGTCATAG

Translation (834 aa):
MAKPTRRGNGTSSESLRQRFRRFHYQEVAGPREAFSQLWELCCRWLRPEVRTKEQIVELLVLEQFLTVLP
VEIQNWVQKQCPENGEEAVTLVEDLERESGRPGHSVTVSVKGQEMHSEKMTPLKSSQELLSVLQESVEPQ
PKGVSKKERARRPALRLQEQMNPKENLRPFQRSGFPFPKPNVVSRLDQGEPWISDLLSSKEKDVPKGNTG
TSLLPSKRERTCWVEQGHWVFDDEKVVGVHWGYKETRTLLAILSQTEFYEALRNCHRNSQVYGAVAGRLR
EYGFLRTLEQCRTKFKGLQKSYRKVKSGHPPDTCPFFEEMEALMSAQVISLPINGLEEAASHSAQAGSDA
ETEKPGQRDWQHEDGEEAIAERSDSDDPEATPQDPDNPPAPVLFRSPSGVHWGYEETKTYLAILSETQFY
EALQNCHRNSQLYGTVAERLWEYGFLRTPEQCRTKFKSLQTSYRKVKNGQALETCPFFEEMDALVSAQVA
APPSDDQEKETVSCCLQRTSEAEPEKQDEDTEEDSDDEDDTEIPPEAVITRAPVLFQSPSGFEAGFENEE
NSKRDISEEVQLHRTLLARSERKISHHVNQSKASKNKCSSESQWEKTQREEQRQLAFPEKNIGKVLTYQR
PGLEDRPYKYVKYGKSSGSNSHLRYPVSHEVENPYKCADCGKSFSRSARLIRHQRIHTGEKPYKCLDCGK
GFRDSSNFITHRRIHTGEKPYQCDECGKRFNQSSSLIIHQRTHTGEKPYQCEECGKSFNNSSHFNAHRRI
HTGERPHVCPDCGKSFSKSSDLHAHHRTHTGKKPYGCHDCGKCFSKSSALSKHRETHTREKLLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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