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Report for CCDS13311.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13311.1 Public Homo sapiens 20 MAFB 24 110 108 CCDS HistoryNCBI Gene:9935Re-query CCDS DB by CCDS ID:13311.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13311.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373313.3 ENSP00000362410.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373313.3Link to Ensembl Protein Viewer:ENSP00000362410.2Re-query CCDS DB by Nucleotide ID:ENST00000373313Re-query CCDS DB by Protein ID:ENSP00000362410
Original member Current member NCBI NM_005461.5 NP_005452.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005461.5Link to Protein Sequence:NP_005452.2Re-query CCDS DB by Nucleotide ID:NM_005461Re-query CCDS DB by Protein ID:NP_005452Link to BLAST:NP_005452.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005452.2 323 Q9Y5Q3 323 100% 0 0

Chromosomal Locations for CCDS 13311.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 40687879 40688850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGGCCGCGGAGCTGAGCATGGGGCCAGAGCTGCCCACCAGCCCGCTGGCCATGGAGTATGTCAACGACT
TCGACCTGCTCAAGTTCGACGTGAAGAAGGAGCCACTGGGGCGCGCGGAGCGTCCGGGCAGGCCCTGCAC
ACGCCTGCAGCCAGCCGGCTCGGTGTCCTCCACACCGCTCAGCACTCCGTGTAGCTCCGTGCCCTCGTCG
CCCAGCTTCAGCCCGACCGAACAGAAGACACACCTCGAGGATCTGTACTGGATGGCGAGCAACTACCAGC
AGATGAACCCCGAGGCGCTCAACCTGACGCCCGAGGACGCGGTGGAAGCGCTCATCGGCTCGCACCCAGT
GCCACAGCCGCTGCAAAGCTTCGACAGCTTTCGCGGCGCTCACCACCACCACCATCACCACCACCCTCAC
CCGCACCACGCGTACCCGGGCGCCGGCGTGGCCCACGACGAGCTGGGCCCGCACGCTCACCCGCACCATC
ACCATCATCACCAAGCGTCGCCGCCGCCGTCCAGCGCCGCTAGCCCGGCGCAACAGCTGCCCACTAGCCA
CCCCGGGCCCGGGCCGCACGCGACGGCCTCGGCGACGGCGGCGGGCGGCAACGGCAGCGTGGAGGACCGC
TTCTCCGACGACCAGCTCGTGTCCATGTCCGTGCGCGAGCTGAACCGCCACCTGCGGGGCTTCACCAAGG
ACGAGGTGATCCGCCTGAAGCAGAAGCGGCGGACCCTGAAGAACCGGGGCTACGCCCAGTCTTGCAGGTA
TAAACGCGTCCAGCAGAAGCACCACCTGGAGAATGAGAAGACGCAGCTCATTCAGCAGGTGGAGCAGCTT
AAGCAGGAGGTGTCCCGGCTGGCCCGCGAGAGAGACGCCTACAAGGTCAAGTGCGAGAAACTCGCCAACT
CCGGCTTCAGGGAGGCGGGCTCCACCAGCGACAGCCCCTCCTCTCCCGAGTTCTTTCTGTGA

Translation (323 aa):
MAAELSMGPELPTSPLAMEYVNDFDLLKFDVKKEPLGRAERPGRPCTRLQPAGSVSSTPLSTPCSSVPSS
PSFSPTEQKTHLEDLYWMASNYQQMNPEALNLTPEDAVEALIGSHPVPQPLQSFDSFRGAHHHHHHHHPH
PHHAYPGAGVAHDELGPHAHPHHHHHHQASPPPSSAASPAQQLPTSHPGPGPHATASATAAGGNGSVEDR
FSDDQLVSMSVRELNRHLRGFTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQL
KQEVSRLARERDAYKVKCEKLANSGFREAGSTSDSPSSPEFFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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