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Report for CCDS17797.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17797.1 Public Mus musculus 3 Dpyd 23 108 98 CCDS HistoryNCBI Gene:99586Re-query CCDS DB by CCDS ID:17797.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17797.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039177.11 ENSMUSP00000039429.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039177.11Link to Ensembl Protein Viewer:ENSMUSP00000039429.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000039177Re-query CCDS DB by Protein ID:ENSMUSP00000039429
Original member Current member NCBI NM_170778.3 NP_740748.1 Accepted alive Link to Nucleotide Sequence:NM_170778.3Link to Protein Sequence:NP_740748.1Re-query CCDS DB by Nucleotide ID:NM_170778Re-query CCDS DB by Protein ID:NP_740748Link to BLAST:NP_740748.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_740748.1 1025 Q8CHR6 1025 100% 0 0

Chromosomal Locations for CCDS 17797.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 118562276 118562314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 118610445 118610555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 118674489 118674571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 118759656 118759743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 118781836 118781997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 118797348 118797544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 118804051 118804132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 118811180 118811267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 118897094 118897201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 118899167 118899336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 118917073 118917283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 118944151 118944335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 118999170 118999385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119064879 119065043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119135722 119135790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119141902 119141985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119194242 119194362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119195069 119195188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119265955 119266097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119314752 119314931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119412134 119412277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119427148 119427288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 119431487 119431657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3078 nt):
ATGGCGGGTGTGCTGAGCAGGGACGCGCCGGACATCGAGAGTATCCTGGCTTTAAACCCTCGAGTACAAG
CTCATGCAACTCTGCGTTCCACCGCAGCCAAGAAACTAGACAAGAAACACTGGAAAAGGAACACGGACAA
GAACTGCTTTACCTGTGAGAAGCTGGAGAGTAATTTTGATGACATCAAGCACACGACTCTTGGTGAGCGA
GGAGCTCTCCGAGAAGCAGTGAGATGCCTGAAGTGCGCAGATGCTCCCTGCCAGAAGAGCTGTCCCACAT
CTCTTGACATTAAATCATTTATCACAAGTATCGCCAACAAGAACTACTATGGTGCAGCTAAGCTGATTTT
TTCTGATAACCCTCTTGGTCTTACTTGTGGAATGGTTTGTCCAACATCTGACCTCTGTGTTGGAGGATGC
AACTTACATGCTGCTGAAGAGGGACCAATTAATATTGGTGGGCTGCAGCAGTTTGCTACTGAGGTGTTCA
AAGCAATGAACATCCCACAGATCAGAAACCCATCGCTGCCTCCTCCGGAACATATGCCGGAAGCCTACTC
AGCAAAAATTGCACTTTTTGGTGCAGGGCCTGCGAGTATAAGCTGTGCCTCCTTTTTGGCTCGGTTGGGC
TATTCCAACATTACTATATTCGAAAAACAAGAATATGTTGGTGGTTTAAGCACTTCTGAAATCCCTCAGT
TTCGACTCCCATATGACGTCGTGAATTTTGAGATTGAGCTCATGAAGGACCTTGGTGTAAAGATAATTTG
TGGTAAAAGCCTTTCCACCGATGAAATGACTCTTAGCTCTTTGAAAGAAAATGGCTACAGAGCTGCATTT
ATTGGAATAGGCTTGCCAGAACCCAAAAAGGACCATATTTTCCAAGGCTTGACACAAGTCCAGGGATTTT
ACACATCTAAAGACTTTCTGCCACTTGTCGCCAAAAGCAGTAAAACAGGAATGTGCGCCTGTCACTCTCC
ATTGCCATCCATAAGGGGAGCCGTGATTGTACTCGGAGCTGGAGATACTGCGTTTGACTGTGCAACATCC
GCTCTGCGCTGTGGAGCCCTTCGCGTGTTCATCGTCTTCAGAAAGGGCTTTGTTAATATTCGAGCTGTTC
CAGAGGAGATGGAGCTCGCTAAGGAAGAGAAATGTGAATTTTTGCCTTTCCTCTCGCCACGGAAGGTTAT
AGTCAAAGATGGAAAGATTGTGGCAATGCAATTTGTTCGAACTGAGCAAGATGAAACCGGAAACTGGGTG
GAAGATGAAGAGCAGACGGTGCGGCTAAAGGCTGATGTGGTTATTAGTGCCTTTGGATCTGTCCTGGAGG
ATCCCAAAGTGAAAGAAGCATTGAGTCCCATCAAGTTTAACAGATGGGGTCTCCCAGAAGTAAATCCAGA
AACCATGCAAACCAGTGAACCATGGGTGTTTGCAGGTGGTGATGTTGTGGGTATGGCTAACACCACAGTG
GAATCTGTCAACGATGGAAAGCAAGCTTCATGGTACATTCACAAGCACATACAGGCACAATATGGAACCT
CAGTGCCTTCTCAGCCTACAATGCCCCTATTTTACACTCCGGTTGACTTAGTGGACATCAGCGTGGAAAT
GGCAGGGTTGAGGTTTCCCAATCCCTTTGGCCTTGCCAGTGCGACACCAGCCACTAGCACACCAATGATT
CGAAGGGCCTTTGAAGCTGGCTGGGGTTTTGCTCTGACCAAAACTTTCTCTCTTGATAAGGACATCGTGA
CAAACGTCTCACCAAGAATCATCCGGGGGACAACTTCTGGCCCCTTGTATGGCCCTGGACAAAGCTCCTT
TCTTAACATTGAGCTCATCAGTGAGAAAACAGCTGCATATTGGTGTCACAGTGTCACCGAACTAAAGGCT
GACTTCCCGGACAATATCCTGATCGCCAGCATCATGTGCAGTTACAACAAGAGTGACTGGATGGAACTCT
CCAAAATGGCTGAGGCTTCTGGAGCAGATGCCCTGGAGTTAAATTTATCGTGTCCACATGGCATGGGGGA
GAGAGGAATGGGCCTGGCTTGTGGGCAGGATCCAGAGCTGGTGAGGAACATCTGTCGCTGGGTTAGGCAA
GCTGTTCGGGTTCCATTTTTTGCCAAGTTGACCCCAAATGTCACTGATATTGTAAGCATCGCAAGAGCAG
CAAAGGAAGGTGGAGCAGATGGTGTAACAGCCACCAACACCGTCTCGGGTCTGATGGGACTGAAAGCTGA
TGGCACACCCTGGCCTGCTGTGGGCATTGGAAGGAGGACTACATATGGAGGAGTGTCAGGAACTGCTATC
AGGCCCATTGCTTTGAGAGCTGTGACCGCCATTGCCCGTGCTTTGCCTGGGTTTCCTATTTTGGCCACAG
GTGGAATTGACTCAGCTGAAAGTGGACTTCAGTTTCTTCATAGTGGTGCTTCAGTTCTTCAGGTATGCAG
CGCTATTCAGAATCAGGACTTCACTGTGATTGAAGATTACTGCACTGGACTCAAAGCCCTGCTTTATCTG
AAGAGCATTGAAGAGTTAGCAGACTGGGATGGTCAGAGTCCACCCATTATAAGTCATCAGAAAGGGAAAC
CAGTTCCACGCGTTGCTGAGCTCATGGGACAGAAACTGCCCAGCTTTGGACCTTACCTTGAACAGCGCAA
GAAAATCATAGCAGCAAGCAAAATCAGACAGAAAGATCAAAACACAGCTTGCTCACCTCTCCAGAGAAAG
CACTTTAACTCGCAAAAGCCTATTCCTGCCATCAAGGATGTAATTGGAAAATCACTGCAATACCTGGGAA
CATTTGGTGAGATGAGCATCATGGAACAAGTTGTGGCCCTGATCGATGAGGAAATGTGCATCAATTGCGG
CAAATGTTACATGACCTGTAATGACTCTGGCTACCAGGCTATCCAGTTCGATCCAGAAACTCACCTGCCT
ACCGTTAGCGACACATGTACAGGCTGTACTCTCTGCCTCAGCGTCTGCCCTATTATGGACTGTATCAGGA
TGGTTTCCAGGGCAACACCTTATCAACCAAAGAGAGGCCTACCATTAGCCGTGAAGCCGGTGTGTTAA

Translation (1025 aa):
MAGVLSRDAPDIESILALNPRVQAHATLRSTAAKKLDKKHWKRNTDKNCFTCEKLESNFDDIKHTTLGER
GALREAVRCLKCADAPCQKSCPTSLDIKSFITSIANKNYYGAAKLIFSDNPLGLTCGMVCPTSDLCVGGC
NLHAAEEGPINIGGLQQFATEVFKAMNIPQIRNPSLPPPEHMPEAYSAKIALFGAGPASISCASFLARLG
YSNITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSTDEMTLSSLKENGYRAAF
IGIGLPEPKKDHIFQGLTQVQGFYTSKDFLPLVAKSSKTGMCACHSPLPSIRGAVIVLGAGDTAFDCATS
ALRCGALRVFIVFRKGFVNIRAVPEEMELAKEEKCEFLPFLSPRKVIVKDGKIVAMQFVRTEQDETGNWV
EDEEQTVRLKADVVISAFGSVLEDPKVKEALSPIKFNRWGLPEVNPETMQTSEPWVFAGGDVVGMANTTV
ESVNDGKQASWYIHKHIQAQYGTSVPSQPTMPLFYTPVDLVDISVEMAGLRFPNPFGLASATPATSTPMI
RRAFEAGWGFALTKTFSLDKDIVTNVSPRIIRGTTSGPLYGPGQSSFLNIELISEKTAAYWCHSVTELKA
DFPDNILIASIMCSYNKSDWMELSKMAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQ
AVRVPFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGIGRRTTYGGVSGTAI
RPIALRAVTAIARALPGFPILATGGIDSAESGLQFLHSGASVLQVCSAIQNQDFTVIEDYCTGLKALLYL
KSIEELADWDGQSPPIISHQKGKPVPRVAELMGQKLPSFGPYLEQRKKIIAASKIRQKDQNTACSPLQRK
HFNSQKPIPAIKDVIGKSLQYLGTFGEMSIMEQVVALIDEEMCINCGKCYMTCNDSGYQAIQFDPETHLP
TVSDTCTGCTLCLSVCPIMDCIRMVSRATPYQPKRGLPLAVKPVC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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