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Report for CCDS38661.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38661.1 Public Mus musculus 3 Clca4a 23 108 98 CCDS HistoryNCBI Gene:99663Re-query CCDS DB by CCDS ID:38661.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38661.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000238960.1 ENSMUSP00000159165.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238960.1Link to Ensembl Protein Viewer:ENSMUSP00000159165.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238960Re-query CCDS DB by Protein ID:ENSMUSP00000159165
Original member Current member NCBI NM_207208.3 NP_997091.3 Accepted alive Link to Nucleotide Sequence:NM_207208.3Link to Protein Sequence:NP_997091.3Re-query CCDS DB by Nucleotide ID:NM_207208Re-query CCDS DB by Protein ID:NP_997091Link to BLAST:NP_997091.3

Chromosomal Locations for CCDS 38661.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 144952675 144953090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144953732 144953965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144954934 144955104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144957130 144957397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144957992 144958207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144960617 144960723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144961843 144962020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144963601 144963828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144966220 144966438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144968232 144968409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144969305 144969413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144970318 144970465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144970612 144970752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 144974850 144975014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2778 nt):
ATGATGGCTTTCTCCAGAGGGCCTGTTTTCCTCCTCCTCCTCCTGTACCTGCTTTGGGGGTCAGACACTT
CCTTGATAAGGCTGAATGAGAATGGTTATGAAGACATCATTATTGCCATTGATCCTGCTGTGCCAGAAGA
TACAACAATAATTGAACACATAAAGGGAATGGTGACTAAAGCATCTACATACCTTTTTGAAGCTACAGAA
AAAAGATTTTTCTTCAAAAATGTATCTATATTAATTCCTGAGAGTTGGAAAGACAGTCCCCAGTACAGGA
GGCCAAAACAGGAGAGTTACAAGCATGCTGACATTAAAGTGGCACCTCCCACCGTTGAGGGCAGAGATGA
GCCCTACACCAGGCAATTCACACAGTGTGAAGAGAAAGCAGAATACATCCACTTCACCCCTGACTTTGTA
CTGGGGAGAAAACAAGATGAATATGGAGATTCAGGAAAAGTGTTGGTCCATGAATGGGCCCACCTTCGCT
GGGGAGTATTTGATGAATACAATGAAGACCAGCCATTCTACAGCGCTTCATCAAAGAAAATCGAAGCAAC
AAGGTGCTCCACAGGTATCACGGGGACGAATAGAGTCTATGCATGCCAAGGGGGCAGCTGTGCGATGAGA
AGGTGCAGAACTAATTCCACCACAAAGTTATATGAAAAGGATTGTCAATTCTTCCCTGATAAAGTTCAAT
CAGAAAAGGCTTCCATAATGTTCATGCAAAGTATCGATTCTGTGACTGAATTCTGTAAAAAGGAAAACCA
TAATCGAGAGGCTCCAACTCTACATAATAAAAAGTGCAATTACAGAAGCACTTGGGAAGTAATCAGCACT
TCTGAGGATTTTAACAGCAGCACGCCCATGGAGACGTCACCCTCTCCACCCTTCTTCTCCCTGCTGAGGA
TCAGTGAGAGAATTATGTGCCTAGTTCTTGATGTGTCTGGGAGTATGACTTCTTATGATCGCCTGAATCG
AATGAACCAAGCAGCAAAATACTTTCTAAGCCAGATAATTGAAAATAGGTCCTGGGTAGGGATGGTGCAC
TTTAGTAGCCAGGCCACTATTGTGCATGAGCTGATCCAAATAAACAGTGACATCGAGAGAAACCAGCTCT
TGCAAACCTTACCTACAAGTGCCAATGGAGGGACGTCCATCTGCTCTGGAATCAAGGCTGCATTTCAGGT
ATTTAAAAATGGAGAATACCAAACAGATGGGACTGAGATCTTGCTGTTGAGTGATGGTGAGGACAGCACA
GCCAAAGACTGTATTGATGAGGTGAAAGACAGCGGGTCCATAGTTCATTTCATTGCCTTGGGACCATCGG
CTGACTTAGCTGTAACAAACATGAGCATTTTAACAGGTGGAAACCATAAGCTTGCTACAGATGAAGCCCA
GAACAATGGACTCATTGATGCTTTCGGGGCCCTGGCTTCAGAAAATGCTGATATCACCCAGAAGTCACTT
CAGCTTGAAAGTAAGGGTGCCATACTGAACAATAGCCTCTGGCTGAATGACACTGTTGTAATTGACAGCA
CCTTGGGAAGGGACACATTCTTTCTTGTCACCTGGAGCAAACAAGCCCCTGCCATTTATCTCAGGGATCC
CAAAGGAACACAAACCACCAATTTCACAATGGACTCTGCTTCCAAAATGGCCTATCTCAGTATTCCAGGA
ACAGCTCAGGTGGGTGTTTGGACTTACAACCTGGAAGCCAAAGAAAACTCAGAGATACTAACGATTACAG
TAACCTCTCGGGCAGCAAATTCTTCTGTGCCACCAATCACTGTAAATGCTAAGGTAAACACGGACACTAA
CACTTTCCCCAGCCCAATGATTGTGTATGCTGAAGTTCTACAAGGTTACACTCCCATCATTGGAGCCCGA
GTGACAGCCACCATAGAATCTAACAGTGGGAAGACAGAAGAGCTAGTCCTTCTGGACAACGGTGCAGGGG
CTGATGCTTTCAAGGATGATGGGGTCTACTCCAGGTTCTTCACAGCTTATTCAGTGAATGGCAGGTATAG
CTTAAAAGTCCGTGCAGATGGAGGAAGAAATTCTGCGAGGAGGAGTTTACGCCACCCATCAAGCAGAGCT
GCATACATACCAGGCTGGGTAGTAGATGGAGAAATTCAAGGGAACCCACCCAGACCCGAAACGACTGAGG
CTACTCAGCCAGTCTTGGAGGATTTCAGCAGGACAGCATCTGGAGGTGCCTTTGTGATGTCCAATGTTCC
AATTGGTCCATTGCCTGATGTATACCCACCAAATCGAATCACAGACCTCCAGGCCACACTCGATGGGGAA
GAGATCAGTCTAACATGGACGGCCCCAGGAGATGATTATGATGTTGGAAGAGTTCAACAGTATATCATAA
GAACAAGCAAAAACATCATTGAACTGAGAGACAATTTTAATAACTCTCCTCGGGTTGATACAACTAACCT
TACACCAAAAGAAGCCAACTCCGAGGAAACCTTTGCCTTTAAACCAGAAAATATCACAGAAGAAAATGCA
ACGTACATATTCATTGCCATTGAAAGTGTCGACAAAAGCAGTTTGAGTTCGGGACCATCCAACATCGCAC
AAGTGGCACTGTTCACCCCTCAGGCAGAGCCTGACCCTGATGAAAGTCCAAGTTTATCAGGAGTTAGTGT
TGCTACTATTGTGCTGTCTGTTTTGGGCGCTCTTGTTCTAGTTTGTATTATTGTAGGTACCACAATTTGT
ATCTTAAAGAACAAAAGGTCCTCATCAGCAGCTATAACAAAATTTTGA

Translation (925 aa):
MMAFSRGPVFLLLLLYLLWGSDTSLIRLNENGYEDIIIAIDPAVPEDTTIIEHIKGMVTKASTYLFEATE
KRFFFKNVSILIPESWKDSPQYRRPKQESYKHADIKVAPPTVEGRDEPYTRQFTQCEEKAEYIHFTPDFV
LGRKQDEYGDSGKVLVHEWAHLRWGVFDEYNEDQPFYSASSKKIEATRCSTGITGTNRVYACQGGSCAMR
RCRTNSTTKLYEKDCQFFPDKVQSEKASIMFMQSIDSVTEFCKKENHNREAPTLHNKKCNYRSTWEVIST
SEDFNSSTPMETSPSPPFFSLLRISERIMCLVLDVSGSMTSYDRLNRMNQAAKYFLSQIIENRSWVGMVH
FSSQATIVHELIQINSDIERNQLLQTLPTSANGGTSICSGIKAAFQVFKNGEYQTDGTEILLLSDGEDST
AKDCIDEVKDSGSIVHFIALGPSADLAVTNMSILTGGNHKLATDEAQNNGLIDAFGALASENADITQKSL
QLESKGAILNNSLWLNDTVVIDSTLGRDTFFLVTWSKQAPAIYLRDPKGTQTTNFTMDSASKMAYLSIPG
TAQVGVWTYNLEAKENSEILTITVTSRAANSSVPPITVNAKVNTDTNTFPSPMIVYAEVLQGYTPIIGAR
VTATIESNSGKTEELVLLDNGAGADAFKDDGVYSRFFTAYSVNGRYSLKVRADGGRNSARRSLRHPSSRA
AYIPGWVVDGEIQGNPPRPETTEATQPVLEDFSRTASGGAFVMSNVPIGPLPDVYPPNRITDLQATLDGE
EISLTWTAPGDDYDVGRVQQYIIRTSKNIIELRDNFNNSPRVDTTNLTPKEANSEETFAFKPENITEENA
TYIFIAIESVDKSSLSSGPSNIAQVALFTPQAEPDPDESPSLSGVSVATIVLSVLGALVLVCIIVGTTIC
ILKNKRSSSAAITKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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