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Report for CCDS17911.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17911.1 Public Mus musculus 3 Ifi44 23 108 98 CCDS HistoryNCBI Gene:99899Re-query CCDS DB by CCDS ID:17911.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17911.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029671.8 ENSMUSP00000029671.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029671.8Link to Ensembl Protein Viewer:ENSMUSP00000029671.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029671Re-query CCDS DB by Protein ID:ENSMUSP00000029671
Original member Current member NCBI NM_133871.3 NP_598632.2 Accepted alive Link to Nucleotide Sequence:NM_133871.3Link to Protein Sequence:NP_598632.2Re-query CCDS DB by Nucleotide ID:NM_133871Re-query CCDS DB by Protein ID:NP_598632Link to BLAST:NP_598632.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598632.2 422 Q8BV66 422 100% 0 0

Chromosomal Locations for CCDS 17911.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 151732380 151732553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 151738223 151738323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 151739320 151739491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 151745491 151745637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 151745793 151745988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 151747618 151747654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 151749145 151749586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1269 nt):
ATGGCCATGAGAACTCGTTTGACATGGCAGCAAGAAAAGTGCCTGCAGAATTATTTTGGAGGAAAACGTT
TTTGTCTTCTTTACAAGGCGAGTGTGCAGAAGTTTTCTCATCAGAATTTGCTCTGCACATGTGAGAATCA
AGGTCCTACCATGATAGTGGTTTACAGTGAAAAGTGTGTTATTGGCATGTACCTGAAAGAGGGCTTCCAG
GGAAAAGATGTTTCTATCACCATTTTTGCACTCCAAGAGACTGGATTTTCACTATGTGCAAAAGGACCAG
ATTCACCATATTTATTGTTCCATAAAAGAAAAACTAATGATTTCTCTATACTATTAGATGAGAAAGCTGT
GATTGTAAGTTCAGCAATCTGTAAAATGCTCCAACTGACTGCTCGCAATAATGTCATACCTATTCAGGAG
TGTGAAGCTTTTCGATGTGAAGAGTTGTTGGATGAAAGAAAGACAAGAGGCATTGCTGTGTTACATAGTA
ATTTACTGCAGGCCCTGAGAGACTACAAGCCCTATGGAGACCTGGTTCAGCAAACACGAGTTCTGCTGCT
GGGTCCTATTGGAGCTGGGAAGTCTAGCTTTGTGAACTCAGTCAAGTCTGTGTTCAAGGGCAGCATCACA
CACCAGATCTTGGTGGGCTGTGATGAAGATGGAATCTCTGACAAGTACAGGACATATTCCATCAAGGCCA
AGGATGACAGTGACCCCCTGCCATTTATTCTGTGTGACTCACTGGGGCTGGGTGAGAATGCCGGCTTGCA
CACAGATGATGTATGGCACATCTTAAAGGGCCACACTCCTGACAGATACCAGTTCGATTCCATGAAACCA
ATCACATCAAACCATCCGAACTATACCCATGACCCACTGCTGAAGGACAGAATTCACTGTGTGGTTTTTG
TGTTTGATATCAATTCTTTTGAAATGCACTCTTCTGAGCTGGTGGCAAAGATCAAGAAAATTCGAAGAGA
CTTGATAAAACATGGCATTCTGCATTTGGCTTTACTTACACACGTGGATAGCCTGGATCTGATTACAAAA
GAAGACATGACAGACATATACAACTATAGTCCTGTGAAGTCCAAGCTGGAGGCATTCCATGGAGTCTTTG
GTTTTGCCTTATCTGACATCTTGGTGGTGAGTAATTATGTCTCAGAGTGGCAGCTGGACCCCGTGAAGGA
CATGCTGATCCTCTCGGCACTGAAGGAGATCCTGTATACTGCAAATGAATTCTTGGAGGATTTGCCTTTG
AACAAATAA

Translation (422 aa):
MAMRTRLTWQQEKCLQNYFGGKRFCLLYKASVQKFSHQNLLCTCENQGPTMIVVYSEKCVIGMYLKEGFQ
GKDVSITIFALQETGFSLCAKGPDSPYLLFHKRKTNDFSILLDEKAVIVSSAICKMLQLTARNNVIPIQE
CEAFRCEELLDERKTRGIAVLHSNLLQALRDYKPYGDLVQQTRVLLLGPIGAGKSSFVNSVKSVFKGSIT
HQILVGCDEDGISDKYRTYSIKAKDDSDPLPFILCDSLGLGENAGLHTDDVWHILKGHTPDRYQFDSMKP
ITSNHPNYTHDPLLKDRIHCVVFVFDINSFEMHSSELVAKIKKIRRDLIKHGILHLALLTHVDSLDLITK
EDMTDIYNYSPVKSKLEAFHGVFGFALSDILVVSNYVSEWQLDPVKDMLILSALKEILYTANEFLEDLPL
NK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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