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Report for CCDS10380.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10380.1 Public Homo sapiens 15 LRRC28 24 110 108 CCDS HistoryNCBI Gene:123355Re-query CCDS DB by CCDS ID:10380.1Re-query CCDS DB by GeneID:123355See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10380.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301981.8 ENSP00000304923.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000301981.8Link to Ensembl Protein Viewer:ENSP00000304923.3Re-query CCDS DB by Nucleotide ID:ENST00000301981Re-query CCDS DB by Protein ID:ENSP00000304923
Original member Current member NCBI NM_001321675.2 NP_001308604.1 Accepted alive Link to Nucleotide Sequence:NM_001321675.2Link to Protein Sequence:NP_001308604.1Re-query CCDS DB by Nucleotide ID:NM_001321675Re-query CCDS DB by Protein ID:NP_001308604Link to BLAST:NP_001308604.1
Original member Current member NCBI NM_144598.5 NP_653199.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144598.5Link to Protein Sequence:NP_653199.2Re-query CCDS DB by Nucleotide ID:NM_144598Re-query CCDS DB by Protein ID:NP_653199Link to BLAST:NP_653199.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001308604.1 367 Q86X40-1 367 100% 0 0
NP_653199.2 367 Q86X40-1 367 100% 0 0

Chromosomal Locations for CCDS 10380.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 99255958 99256125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99276576 99276616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99287257 99287294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99287814 99287951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99333923 99334129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99352369 99352471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99361336 99361511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99363106 99363265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99386030 99386102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGGCGTCCGAACTTTGTAAGACGATCTCTGTGGCAAGGCTAGAAAAGCACAAGAATTTGTTCTTAAATT
ATAGGAATCTGCACCATTTTCCATTGGAGTTACTGAAAGATGAGGGACTGCAGTACTTGGAGAGACTCTA
TATGAAAAGGAACTCCCTGACATCCTTGCCAGAAAACCTTGCTCAGAAGCTTCCAAACCTTGTGGAACTA
TACCTGCACTCAAATAACATAGTTGTGGTTCCGGAAGCCATTGGGTCTCTTGTAAAACTCCAATGTCTGG
ATCTTAGTGACAATGCCTTAGAAATTGTTTGCCCAGAAATTGGTCGTCTGAGAGCTTTACGTCATCTTCG
ATTAGCTAATAACCAACTGCAATTCCTACCTCCAGAGGTTGGCGATTTGAAGGAGCTGCAGACACTAGAC
ATTTCTACCAATCGTTTGCTAACTTTACCCGAGAGGCTTCACATGTGCCTTTCTCTGCAGTACCTCACTG
TGGACCGAAATCGTCTATGGTATGTGCCGCGCCATCTCTGCCAGCTGCCCAGCCTCAATGAGCTCTCCAT
GGCTGGAAACCGTCTTGCATTTTTGCCACTTGATTTAGGTCGATCTCGAGAACTACAGTATGTATACGTG
GATAACAACATTCACCTGAAAGGCTTGCCATCTTATCTGTACAATAAAGTCATCGGGTGCAGTGGCTGTG
GTGCTCCCATTCAAGTTTCCGAGGTGAAGCTGCTTTCCTTTTCATCAGGGCAGCGAACCGTTTTCCTCCC
AGCTGAGGTGAAGGCCATAGGGACGGAGCATGATCACGTCCTCCCTCTGCAGGAATTGGCTATGAGAGGG
CTGTATCATACCTACCACAGCTTGCTGAAAGATTTGAACTTTCTGTCTCCAATCTCATTACCCAGAAGTC
TCCTAGAGCTGCTGCACTGCCCTCTGGGGCACTGTCATCGGTGTAGTGAGCCTATGTTTACCATCGTCTA
CCCCAAGCTCTTTCCCTTGAGAGAGACGCCAATGGCAGGGCTGCACCAGTGGAAGACAACTGTTAGTTTT
GTGGCTTACTGCTGCTCCACCCAGTGTCTGCAGACTTTTGACCTGCTGAGTTGA

Translation (367 aa):
MASELCKTISVARLEKHKNLFLNYRNLHHFPLELLKDEGLQYLERLYMKRNSLTSLPENLAQKLPNLVEL
YLHSNNIVVVPEAIGSLVKLQCLDLSDNALEIVCPEIGRLRALRHLRLANNQLQFLPPEVGDLKELQTLD
ISTNRLLTLPERLHMCLSLQYLTVDRNRLWYVPRHLCQLPSLNELSMAGNRLAFLPLDLGRSRELQYVYV
DNNIHLKGLPSYLYNKVIGCSGCGAPIQVSEVKLLSFSSGQRTVFLPAEVKAIGTEHDHVLPLQELAMRG
LYHTYHSLLKDLNFLSPISLPRSLLELLHCPLGHCHRCSEPMFTIVYPKLFPLRETPMAGLHQWKTTVSF
VAYCCSTQCLQTFDLLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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