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Report for CCDS10510.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10510.1 Public Homo sapiens 16 TFAP4 24 110 108 CCDS HistoryNCBI Gene:7023Re-query CCDS DB by CCDS ID:10510.1Re-query CCDS DB by GeneID:7023See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10510.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000204517.11 ENSP00000204517.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000204517.11Link to Ensembl Protein Viewer:ENSP00000204517.6Re-query CCDS DB by Nucleotide ID:ENST00000204517Re-query CCDS DB by Protein ID:ENSP00000204517
Original member Current member NCBI NM_003223.3 NP_003214.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003223.3Link to Protein Sequence:NP_003214.1Re-query CCDS DB by Nucleotide ID:NM_003223Re-query CCDS DB by Protein ID:NP_003214Link to BLAST:NP_003214.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003214.1 338 Q01664 338 100% 0 0

Chromosomal Locations for CCDS 10510.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 4258055 4258249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4260090 4260245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4260455 4260595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4261779 4261949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4262324 4262422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4262536 4262701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 4272658 4272746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1017 nt):
ATGGAGTATTTCATGGTGCCCACTCAGAAGGTGCCCTCTTTGCAACATTTCAGGAAAACAGAGAAAGAAG
TGATAGGAGGGCTCTGTAGCCTTGCCAACATTCCACTAACCCCCGAGACTCAGCGGGACCAGGAGCGGCG
GATTCGGCGGGAGATCGCCAACAGCAACGAGCGGAGACGCATGCAGAGCATCAACGCGGGATTCCAGTCC
CTCAAGACCCTCATCCCCCACACAGACGGAGAGAAGCTCAGCAAGGCAGCCATTCTCCAGCAGACAGCCG
AGTACATCTTCTCCCTGGAGCAGGAGAAGACCAGGCTCTTGCAGCAGAACACACAGCTCAAGCGCTTCAT
CCAGGAGCTGAGCGGCTCGTCCCCCAAGCGACGGCGGGCAGAGGACAAGGACGAAGGCATAGGCTCCCCG
GACATCTGGGAGGACGAGAAGGCGGAGGACCTGCGGCGGGAGATGATTGAGCTGCGGCAGCAGCTGGACA
AGGAGCGCTCGGTGCGCATGATGCTGGAGGAGCAGGTGCGCTCGCTGGAGGCCCACATGTACCCGGAAAA
GCTCAAGGTGATTGCGCAGCAGGTGCAGCTGCAGCAGCAGCAGGAACAGGTGAGGCTGCTGCACCAGGAG
AAGCTGGAGCGGGAACAGCAGCAGCTGCGGACCCAGCTTCTGCCCCCTCCGGCCCCCACCCACCACCCCA
CGGTGATCGTGCCAGCACCGCCTCCTCCTCCCTCCCACCACATCAATGTCGTCACCATGGGCCCCTCCTC
GGTCATCAACTCTGTTTCCACATCCCGGCAAAATCTGGACACCATCGTGCAGGCAATCCAGCACATCGAG
GGCACCCAGGAAAAGCAGGAGCTGGAGGAGGAGCAGCGGCGAGCTGTCATCGTGAAGCCTGTCCGCAGCT
GCCCGGAGGCCCCCACCTCTGACACCGCCTCCGACTCCGAGGCCTCAGACAGTGACGCCATGGACCAGAG
CCGGGAGGAGCCGTCGGGGGACGGGGAGCTTCCCTGA

Translation (338 aa):
MEYFMVPTQKVPSLQHFRKTEKEVIGGLCSLANIPLTPETQRDQERRIRREIANSNERRRMQSINAGFQS
LKTLIPHTDGEKLSKAAILQQTAEYIFSLEQEKTRLLQQNTQLKRFIQELSGSSPKRRRAEDKDEGIGSP
DIWEDEKAEDLRREMIELRQQLDKERSVRMMLEEQVRSLEAHMYPEKLKVIAQQVQLQQQQEQVRLLHQE
KLEREQQQLRTQLLPPPAPTHHPTVIVPAPPPPPSHHINVVTMGPSSVINSVSTSRQNLDTIVQAIQHIE
GTQEKQELEEEQRRAVIVKPVRSCPEAPTSDTASDSEASDSDAMDQSREEPSGDGELP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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