NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS10646.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10646.1 Public Homo sapiens 16 SPNS1 24 110 108 CCDS HistoryNCBI Gene:83985Re-query CCDS DB by CCDS ID:10646.1Re-query CCDS DB by GeneID:83985See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 10646.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311008.16 ENSP00000309945.11 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000311008.16Link to Ensembl Protein Viewer:ENSP00000309945.11Re-query CCDS DB by Nucleotide ID:ENST00000311008Re-query CCDS DB by Protein ID:ENSP00000309945
Original member Current member NCBI NM_001142448.2 NP_001135920.1 Accepted alive Link to Nucleotide Sequence:NM_001142448.2Link to Protein Sequence:NP_001135920.1Re-query CCDS DB by Nucleotide ID:NM_001142448Re-query CCDS DB by Protein ID:NP_001135920Link to BLAST:NP_001135920.1
Original member Current member NCBI NM_032038.3 NP_114427.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032038.3Link to Protein Sequence:NP_114427.1Re-query CCDS DB by Nucleotide ID:NM_032038Re-query CCDS DB by Protein ID:NP_114427Link to BLAST:NP_114427.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135920.1 528 Q9H2V7-1 528 100% 0 0
NP_114427.1 528 Q9H2V7-1 528 100% 0 0

Chromosomal Locations for CCDS 10646.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 28975152 28975392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28975492 28975557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28977908 28978044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28979155 28979306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28979405 28979471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28981470 28981615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28981901 28982056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28982356 28982545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28982857 28982922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28983192 28983290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28983786 28983957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 28984205 28984299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1587 nt):
ATGGCCGGGTCCGACACCGCGCCCTTCCTCAGCCAGGCGGATGACCCGGACGACGGGCCAGTGCCTGGCA
CCCCGGGGTTGCCAGGGTCCACGGGGAACCCGAAGTCCGAGGAGCCCGAGGTCCCGGACCAGGAGGGGCT
GCAGCGCATCACCGGCCTGTCTCCCGGCCGTTCGGCTCTCATAGTGGCGGTGCTGTGCTACATCAATCTC
CTGAACTACATGGACCGCTTCACCGTGGCTGGCGTCCTTCCCGACATCGAGCAGTTCTTCAACATCGGGG
ACAGTAGCTCTGGGCTCATCCAGACCGTGTTCATCTCCAGTTACATGGTGTTGGCACCTGTGTTTGGCTA
CCTGGGTGACAGGTACAATCGGAAGTATCTCATGTGCGGGGGCATTGCCTTCTGGTCCCTGGTGACACTG
GGGTCATCCTTCATCCCCGGAGAGCATTTCTGGCTGCTCCTCCTGACCCGGGGCCTGGTGGGGGTCGGGG
AGGCCAGTTATTCCACCATCGCGCCCACTCTCATTGCCGACCTCTTTGTGGCCGACCAGCGGAGCCGGAT
GCTCAGCATCTTCTACTTTGCCATTCCGGTGGGCAGTGGTCTGGGCTACATTGCAGGCTCCAAAGTGAAG
GATATGGCTGGAGACTGGCACTGGGCTCTGAGGGTGACACCGGGTCTAGGAGTGGTGGCCGTTCTGCTGC
TGTTCCTGGTAGTGCGGGAGCCGCCAAGGGGAGCCGTGGAGCGCCACTCAGATTTGCCACCCCTGAACCC
CACCTCGTGGTGGGCAGATCTGAGGGCTCTGGCAAGAAATCCTAGTTTCGTCCTGTCTTCCCTGGGCTTC
ACTGCTGTGGCCTTTGTCACGGGCTCCCTGGCTCTGTGGGCTCCGGCATTCCTGCTGCGTTCCCGCGTGG
TCCTTGGGGAGACCCCACCCTGCCTTCCCGGAGACTCCTGCTCTTCCTCTGACAGTCTCATCTTTGGACT
CATCACCTGCCTGACCGGAGTCCTGGGTGTGGGCCTGGGTGTGGAGATCAGCCGCCGGCTCCGCCACTCC
AACCCCCGGGCTGATCCCCTGGTCTGTGCCACTGGCCTCCTGGGCTCTGCACCCTTCCTCTTCCTGTCCC
TTGCCTGCGCCCGTGGTAGCATCGTGGCCACTTATATTTTCATCTTCATTGGAGAGACCCTCCTGTCCAT
GAACTGGGCCATCGTGGCCGACATTCTGCTGTACGTGGTGATCCCTACCCGACGCTCCACCGCCGAGGCC
TTCCAGATCGTGCTGTCCCACCTGCTGGGTGATGCTGGGAGCCCCTACCTCATTGGCCTGATCTCTGACC
GCCTGCGCCGGAACTGGCCCCCCTCCTTCTTGTCCGAGTTCCGGGCTCTGCAGTTCTCGCTCATGCTCTG
CGCGTTTGTTGGGGCACTGGGCGGCGCAGCCTTCCTGGGCACCGCCATCTTCATTGAGGCCGACCGCCGG
CGGGCACAGCTGCACGTGCAGGGCCTGCTGCACGAAGCAGGGTCCACAGACGACCGGATTGTGGTGCCCC
AGCGGGGCCGCTCCACCCGCGTGCCCGTGGCCAGTGTGCTCATCTGA

Translation (528 aa):
MAGSDTAPFLSQADDPDDGPVPGTPGLPGSTGNPKSEEPEVPDQEGLQRITGLSPGRSALIVAVLCYINL
LNYMDRFTVAGVLPDIEQFFNIGDSSSGLIQTVFISSYMVLAPVFGYLGDRYNRKYLMCGGIAFWSLVTL
GSSFIPGEHFWLLLLTRGLVGVGEASYSTIAPTLIADLFVADQRSRMLSIFYFAIPVGSGLGYIAGSKVK
DMAGDWHWALRVTPGLGVVAVLLLFLVVREPPRGAVERHSDLPPLNPTSWWADLRALARNPSFVLSSLGF
TAVAFVTGSLALWAPAFLLRSRVVLGETPPCLPGDSCSSSDSLIFGLITCLTGVLGVGLGVEISRRLRHS
NPRADPLVCATGLLGSAPFLFLSLACARGSIVATYIFIFIGETLLSMNWAIVADILLYVVIPTRRSTAEA
FQIVLSHLLGDAGSPYLIGLISDRLRRNWPPSFLSEFRALQFSLMLCAFVGALGGAAFLGTAIFIEADRR
RAQLHVQGLLHEAGSTDDRIVVPQRGRSTRVPVASVLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH