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Report for CCDS11363.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11363.2 Public Homo sapiens 17 RAPGEFL1 24 110 108 CCDS HistoryNCBI Gene:51195Re-query CCDS DB by CCDS ID:11363.2Re-query CCDS DB by GeneID:51195See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 11363.1
The coding region has been updated to start at an alternate in-frame start codon that is more supported by conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 11363.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000620260.6 ENSP00000479735.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000620260.6Link to Ensembl Protein Viewer:ENSP00000479735.1Re-query CCDS DB by Nucleotide ID:ENST00000620260Re-query CCDS DB by Protein ID:ENSP00000479735
Original member Current member NCBI NM_016339.6 NP_057423.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016339.6Link to Protein Sequence:NP_057423.2Re-query CCDS DB by Nucleotide ID:NM_016339Re-query CCDS DB by Protein ID:NP_057423Link to BLAST:NP_057423.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057423.2 662 Q9UHV5-1 662 99.6979% 0 2

Chromosomal Locations for CCDS 11363.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 40177862 40178381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40181616 40181694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40184214 40184349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40184581 40184678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40188866 40188978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40189208 40189375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40190434 40190531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40190640 40190762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40191316 40191494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40191582 40191672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40192213 40192263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40192606 40192693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40192926 40192990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40193363 40193417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 40193664 40193788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1989 nt):
ATGAAGCCGCTGGAGAAATTTCTGAAGAAGCAGACGTCGCAGCTGGCGGGCCGAACGGTGGCGGGAGGTC
CCGGCGGGGGTCTGGGGAGCTGCGGTGGGCCTGGAGGGGGTGGGGGACCCGGCGGGGGCGGCGGTCCAGC
CGGGGGACAGCGGTCGTTGCAGCGGCGTCAGAGCGTGTCTCGCCTGCTGCTCCCCGCTTTCCTCCGGGAG
CCCCCCGCCGAGCCGGGGCTGGAGCCGCCCCCTGAGGAGGAAGGAGGAGAGCCGGCGGGGGTCGCGGAGG
AGCCGGGCAGCGGGGGGCCCTGCTGGCTGCAGCTGGAGGAGGTGCCGGGGCCCGGGCCTCTCGGGGGAGG
GGGGCCCCTGCGCTCCCCTTCCTCCTACTCATCTGACGAGCTGTCCCCAGGCGAGCCCTTGACTTCGCCG
CCCTGGGCCCCTCTGGGCGCCCCCGAGCGGCCCGAGCATCTTCTGAACCGGGTTCTGGAGCGGCTTGCTG
GAGGGGCTACCAGGGACAGCGCCGCCTCAGATATCCTGCTGGATGACATTGTCCTTACCCATTCTCTCTT
CCTCCCGACGGAGAAATTTCTGCAGGAGCTACACCAGTACTTTGTTCGGGCAGGAGGCATGGAGGGCCCT
GAAGGGCTGGGCCGGAAGCAAGCCTGTCTAGCCATGCTTCTCCATTTCTTGGACACCTACCAGGGGCTGC
TTCAAGAGGAAGAGGGGGCCGGCCACATCATCAAGGATCTATACCTGCTAATTATGAAGGACGAGTCCCT
TTACCAGGGCCTCCGAGAGGACACTCTGAGGCTGCACCAGCTGGTGGAGACGGTGGAACTAAAGATTCCA
GAGGAGAACCAGCCACCCAGCAAGCAGGTGAAGCCACTCTTCCGCCACTTCCGCCGGATAGACTCCTGTC
TGCAGACCCGGGTGGCCTTCCGGGGCTCTGATGAGATCTTCTGCCGTGTATACATGCCTGACCACTCTTA
TGTGACCATACGCAGCCGCCTTTCAGCATCTGTGCAGGACATTCTGGGCTCTGTGACGGAGAAACTTCAA
TATTCAGAGGAGCCCGCGGGGCGTGAGGATTCCCTCATCCTGGTAGCTGTGTCCTCCTCTGGAGAGAAGG
TCCTTCTCCAGCCCACTGAGGACTGTGTTTTCACCGCACTGGGCATCAACAGCCACCTGTTTGCCTGTAC
TCGGGACAGCTATGAGGCTCTGGTGCCCCTCCCCGAGGAGATCCAGGTCTCCCCTGGAGACACAGAGATC
CACCGAGTGGAGCCTGAGGACGTTGCCAACCACCTAACTGCCTTCCACTGGGAGCTGTTCCGATGTGTGC
ATGAGCTGGAGTTCGTGGACTACGTGTTCCACGGGGAGCGCGGCCGCCGGGAGACGGCCAACTTGGAGCT
GCTGCTGCAGCGCTGCAGCGAGGTCACGCACTGGGTGGCCACCGAAGTGCTGCTCTGCGAGGCCCCGGGC
AAGCGCGCGCAGCTGCTCAAGAAGTTCATCAAGATCGCGGCCCTCTGCAAGCAGAACCAGGACCTGCTGT
CTTTCTACGCCGTGGTCATGGGGCTGGACAACGCCGCTGTCAGCCGCCTTCGACTCACCTGGGAGAAGCT
GCCAGGGAAATTCAAGAACTTGTTTCGCAAATTTGAGAACCTGACGGACCCCTGCAGGAACCACAAAAGC
TACCGAGAAGTGATCTCCAAAATGAAGCCCCCTGTGATTCCCTTCGTGCCTCTGATCCTCAAAGACCTGA
CTTTCCTGCACGAAGGGAGTAAGACCCTTGTAGATGGTTTGGTGAACATCGAGAAGCTGCATTCAGTGGC
CGAAAAAGTGAGGACAATCCGCAAATACCGGAGCCGGCCCCTTTGCCTGGACATGGAGGCATCCCCCAAT
CACCTGCAGACCAAGGCCTATGTGCGCCAGTTTCAGGTCATCGACAACCAGAACCTCCTCTTCGAGCTCT
CCTACAAGCTGGAGGCAAACAGTCAGTGA

Translation (662 aa):
MKPLEKFLKKQTSQLAGRTVAGGPGGGLGSCGGPGGGGGPGGGGGPAGGQRSLQRRQSVSRLLLPAFLRE
PPAEPGLEPPPEEEGGEPAGVAEEPGSGGPCWLQLEEVPGPGPLGGGGPLRSPSSYSSDELSPGEPLTSP
PWAPLGAPERPEHLLNRVLERLAGGATRDSAASDILLDDIVLTHSLFLPTEKFLQELHQYFVRAGGMEGP
EGLGRKQACLAMLLHFLDTYQGLLQEEEGAGHIIKDLYLLIMKDESLYQGLREDTLRLHQLVETVELKIP
EENQPPSKQVKPLFRHFRRIDSCLQTRVAFRGSDEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQ
YSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLFACTRDSYEALVPLPEEIQVSPGDTEI
HRVEPEDVANHLTAFHWELFRCVHELEFVDYVFHGERGRRETANLELLLQRCSEVTHWVATEVLLCEAPG
KRAQLLKKFIKIAALCKQNQDLLSFYAVVMGLDNAAVSRLRLTWEKLPGKFKNLFRKFENLTDPCRNHKS
YREVISKMKPPVIPFVPLILKDLTFLHEGSKTLVDGLVNIEKLHSVAEKVRTIRKYRSRPLCLDMEASPN
HLQTKAYVRQFQVIDNQNLLFELSYKLEANSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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