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Report for CCDS11410.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11410.2 Public Homo sapiens 17 NT5C3B 24 110 108 CCDS HistoryNCBI Gene:115024Re-query CCDS DB by CCDS ID:11410.2Re-query CCDS DB by GeneID:115024See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 11410.1
The coding region has been updated to represent an alternative 5' splicing pattern, resulting in an N-terminal extension that is more supported by the available transcript and conservation data. There are no full-length transcripts representing this update in human, but it is supported by partial ESTs, including CN393115.1, DN602074.1, CX762257.1, CX762257.1, BF529786.1 and CX754238.1. This update is also supported by protein homology to mouse NP_001096120.1 and rat NP_001007724.2.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 11410.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000435506.7 ENSP00000389948.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000435506.7Link to Ensembl Protein Viewer:ENSP00000389948.2Re-query CCDS DB by Nucleotide ID:ENST00000435506Re-query CCDS DB by Protein ID:ENSP00000389948
Original member Current member NCBI NM_052935.5 NP_443167.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052935.5Link to Protein Sequence:NP_443167.4Re-query CCDS DB by Nucleotide ID:NM_052935Re-query CCDS DB by Protein ID:NP_443167Link to BLAST:NP_443167.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443167.4 300 Q969T7-1 300 100% 0 0

Chromosomal Locations for CCDS 11410.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 41825523 41825657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41827426 41827626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41828790 41828952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41830801 41830890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41832392 41832477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41835070 41835116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41835203 41835272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41835859 41835957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 41836182 41836193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGGCAGAGGAGGTGAGCACCCTGATGAAGGCCACGGTCCTGATGCGGCAGCCTGGGCGGGTGCAGGAGA
TCGTGGGCGCCCTCCGCAAGGGCGGCGGAGACCGGTTACAGGTGATTTCTGATTTTGACATGACCTTGAG
CAGGTTTGCATATAATGGAAAGCGATGCCCTTCTTCTTACAATATTCTGGATAATAGCAAGATCATCAGT
GAGGAGTGTCGGAAAGAGCTCACAGCGCTCCTTCACCACTATTACCCAATTGAGATCGACCCACACCGGA
CCGTCAAGGAGAAGCTACCTCATATGGTGGAATGGTGGACCAAAGCACACAATCTCCTATGTCAGCAGAA
GATTCAGAAGTTTCAGATAGCCCAGGTGGTTAGAGAGTCCAATGCAATGCTCAGGGAGGGATATAAGACC
TTCTTCAACACACTCTACCATAACAACATTCCCCTTTTCATCTTTTCTGCGGGCATTGGTGATATCCTGG
AAGAAATTATCCGACAGATGAAAGTGTTCCACCCCAACATCCACATCGTGTCTAACTACATGGATTTTAA
TGAAGATGGTTTTCTCCAGGGATTTAAGGGCCAGCTCATACACACATACAACAAGAACAGCTCTGCGTGT
GAGAACTCTGGTTACTTCCAGCAACTTGAGGGCAAAACCAATGTCATCCTGCTGGGAGACTCTATCGGGG
ACCTCACCATGGCCGATGGGGTTCCTGGTGTGCAGAACATTCTCAAAATTGGCTTCCTGAATGACAAGGT
GGAGGAGCGGCGGGAGCGCTACATGGACTCCTATGACATCGTGCTGGAGAAGGACGAGACTCTGGATGTG
GTCAACGGGCTACTGCAGCACATCCTGTGCCAGGGGGTCCAGCTGGAGATGCAAGGCCCCTGA

Translation (300 aa):
MAEEVSTLMKATVLMRQPGRVQEIVGALRKGGGDRLQVISDFDMTLSRFAYNGKRCPSSYNILDNSKIIS
EECRKELTALLHHYYPIEIDPHRTVKEKLPHMVEWWTKAHNLLCQQKIQKFQIAQVVRESNAMLREGYKT
FFNTLYHNNIPLFIFSAGIGDILEEIIRQMKVFHPNIHIVSNYMDFNEDGFLQGFKGQLIHTYNKNSSAC
ENSGYFQQLEGKTNVILLGDSIGDLTMADGVPGVQNILKIGFLNDKVEERRERYMDSYDIVLEKDETLDV
VNGLLQHILCQGVQLEMQGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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