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Report for CCDS11475.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11475.1 Public Homo sapiens 17 LSM12 24 110 108 CCDS HistoryNCBI Gene:124801Re-query CCDS DB by CCDS ID:11475.1Re-query CCDS DB by GeneID:124801See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11475.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000293406.8 ENSP00000293406.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000293406.8Link to Ensembl Protein Viewer:ENSP00000293406.3Re-query CCDS DB by Nucleotide ID:ENST00000293406Re-query CCDS DB by Protein ID:ENSP00000293406
Original member Current member EBI ENST00000591247.6 ENSP00000466718.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000591247.6Link to Ensembl Protein Viewer:ENSP00000466718.1Re-query CCDS DB by Nucleotide ID:ENST00000591247Re-query CCDS DB by Protein ID:ENSP00000466718
Original member Current member NCBI NM_001371445.1 NP_001358374.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001371445.1Link to Protein Sequence:NP_001358374.1Re-query CCDS DB by Nucleotide ID:NM_001371445Re-query CCDS DB by Protein ID:NP_001358374Link to BLAST:NP_001358374.1
Original member Current member NCBI NM_152344.4 NP_689557.1 Accepted alive Link to Nucleotide Sequence:NM_152344.4Link to Protein Sequence:NP_689557.1Re-query CCDS DB by Nucleotide ID:NM_152344Re-query CCDS DB by Protein ID:NP_689557Link to BLAST:NP_689557.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001358374.1 195 Q3MHD2-1 195 100% 0 0
NP_689557.1 195 Q3MHD2-1 195 100% 0 0

Chromosomal Locations for CCDS 11475.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 44036208 44036300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44037412 44037538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44040147 44040256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44063801 44063934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44066464 44066587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (588 nt):
ATGGCGGCTCCTCCGGGCGAGTACTTCAGCGTTGGGAGCCAGGTGTCGTGCCGGACGTGCCAGGAGCAGC
GGCTGCAGGGCGAGGTGGTAGCCTTTGACTACCAATCCAAAATGCTGGCTTTAAAATGTCCCTCTTCCAG
TGGAAAGCCCAACCATGCAGACATCTTGCTCATAAACTTACAGTATGTTTCAGAAGTGGAAATAATTAAT
GACCGAACAGAAACCCCTCCTCCCCTAGCTTCACTCAATGTTAGTAAGCTTGCCAGCAAAGCACGGACAG
AGAAGGAGGAGAAGCTGAGCCAGGCCTATGCAATCAGTGCTGGTGTCTCTCTAGAGGGCCAGCAGCTCTT
CCAGACCATTCACAAGACCATTAAAGACTGTAAATGGCAAGAAAAAAACATCGTAGTCATGGAAGAAGTT
GTTATTACACCCCCATATCAAGTGGAAAACTGTAAAGGCAAAGAGGGGAGTGCACTGAGCCATGTACGCA
AAATAGTTGAAAAACATTTTAGAGACGTGGAAAGCCAAAAGATACTGCAACGTTCACAAGCCCAGCAACC
ACAGAAGGAGGCTGCCCTGTCATCCTGA

Translation (195 aa):
MAAPPGEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSEVEIIN
DRTETPPPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTIHKTIKDCKWQEKNIVVMEEV
VITPPYQVENCKGKEGSALSHVRKIVEKHFRDVESQKILQRSQAQQPQKEAALSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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