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Report for CCDS11479.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11479.1 Public Homo sapiens 17 TMUB2 24 110 108 CCDS HistoryNCBI Gene:79089Re-query CCDS DB by CCDS ID:11479.1Re-query CCDS DB by GeneID:79089See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11479.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000319511.6 ENSP00000313214.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000319511.6Link to Ensembl Protein Viewer:ENSP00000313214.5Re-query CCDS DB by Nucleotide ID:ENST00000319511Re-query CCDS DB by Protein ID:ENSP00000313214
Original member Current member EBI ENST00000357984.7 ENSP00000350672.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000357984.7Link to Ensembl Protein Viewer:ENSP00000350672.3Re-query CCDS DB by Nucleotide ID:ENST00000357984Re-query CCDS DB by Protein ID:ENSP00000350672
Original member Current member EBI ENST00000589785.1 ENSP00000467364.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000589785.1Link to Ensembl Protein Viewer:ENSP00000467364.1Re-query CCDS DB by Nucleotide ID:ENST00000589785Re-query CCDS DB by Protein ID:ENSP00000467364
Original member Current member NCBI NM_001353173.2 NP_001340102.1 Accepted alive Link to Nucleotide Sequence:NM_001353173.2Link to Protein Sequence:NP_001340102.1Re-query CCDS DB by Nucleotide ID:NM_001353173Re-query CCDS DB by Protein ID:NP_001340102Link to BLAST:NP_001340102.1
Original member Current member NCBI NM_001353175.2 NP_001340104.1 Accepted alive Link to Nucleotide Sequence:NM_001353175.2Link to Protein Sequence:NP_001340104.1Re-query CCDS DB by Nucleotide ID:NM_001353175Re-query CCDS DB by Protein ID:NP_001340104Link to BLAST:NP_001340104.1
Original member Current member NCBI NM_001353176.2 NP_001340105.1 Accepted alive Link to Nucleotide Sequence:NM_001353176.2Link to Protein Sequence:NP_001340105.1Re-query CCDS DB by Nucleotide ID:NM_001353176Re-query CCDS DB by Protein ID:NP_001340105Link to BLAST:NP_001340105.1
Original member Current member NCBI NM_001353178.2 NP_001340107.1 Accepted alive Link to Nucleotide Sequence:NM_001353178.2Link to Protein Sequence:NP_001340107.1Re-query CCDS DB by Nucleotide ID:NM_001353178Re-query CCDS DB by Protein ID:NP_001340107Link to BLAST:NP_001340107.1
Original member Current member NCBI NM_001353182.2 NP_001340111.1 Accepted alive Link to Nucleotide Sequence:NM_001353182.2Link to Protein Sequence:NP_001340111.1Re-query CCDS DB by Nucleotide ID:NM_001353182Re-query CCDS DB by Protein ID:NP_001340111Link to BLAST:NP_001340111.1
Original member Current member NCBI NM_001353183.2 NP_001340112.1 Accepted alive Link to Nucleotide Sequence:NM_001353183.2Link to Protein Sequence:NP_001340112.1Re-query CCDS DB by Nucleotide ID:NM_001353183Re-query CCDS DB by Protein ID:NP_001340112Link to BLAST:NP_001340112.1
Original member Current member NCBI NM_001353188.2 NP_001340117.1 Accepted alive Link to Nucleotide Sequence:NM_001353188.2Link to Protein Sequence:NP_001340117.1Re-query CCDS DB by Nucleotide ID:NM_001353188Re-query CCDS DB by Protein ID:NP_001340117Link to BLAST:NP_001340117.1
Original member Current member NCBI NM_001353190.2 NP_001340119.1 Accepted alive Link to Nucleotide Sequence:NM_001353190.2Link to Protein Sequence:NP_001340119.1Re-query CCDS DB by Nucleotide ID:NM_001353190Re-query CCDS DB by Protein ID:NP_001340119Link to BLAST:NP_001340119.1
Original member Current member NCBI NM_001353191.2 NP_001340120.1 Accepted alive Link to Nucleotide Sequence:NM_001353191.2Link to Protein Sequence:NP_001340120.1Re-query CCDS DB by Nucleotide ID:NM_001353191Re-query CCDS DB by Protein ID:NP_001340120Link to BLAST:NP_001340120.1
Original member Current member NCBI NM_024107.4 NP_077012.2 Accepted alive Link to Nucleotide Sequence:NM_024107.4Link to Protein Sequence:NP_077012.2Re-query CCDS DB by Nucleotide ID:NM_024107Re-query CCDS DB by Protein ID:NP_077012Link to BLAST:NP_077012.2
Original member Current member NCBI NM_177441.4 NP_803190.2 Accepted alive Link to Nucleotide Sequence:NM_177441.4Link to Protein Sequence:NP_803190.2Re-query CCDS DB by Nucleotide ID:NM_177441Re-query CCDS DB by Protein ID:NP_803190Link to BLAST:NP_803190.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001340102.1 301 Q71RG4-2 301 100% 0 0
NP_001340104.1 301 Q71RG4-2 301 100% 0 0
NP_001340105.1 301 Q71RG4-2 301 100% 0 0
NP_001340107.1 301 Q71RG4-2 301 100% 0 0
NP_001340111.1 301 Q71RG4-2 301 100% 0 0
NP_001340112.1 301 Q71RG4-2 301 100% 0 0
NP_001340117.1 301 Q71RG4-2 301 100% 0 0
NP_001340119.1 301 Q71RG4-2 301 100% 0 0
NP_001340120.1 301 Q71RG4-2 301 100% 0 0
NP_077012.2 301 Q71RG4-2 301 100% 0 0
NP_803190.2 301 Q71RG4-2 301 100% 0 0

Chromosomal Locations for CCDS 11479.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 44189047 44189588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 44190501 44190864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (906 nt):
ATGGAGCTCTCTGATGTCACCCTCATTGAGGGTGTGGGTAATGAGGTGATGGTGGTGGCAGGTGTGGTGG
TGCTGATTCTAGCCTTGGTCCTAGCTTGGCTCTCTACCTACGTAGCAGACAGCGGTAGCAACCAGCTCCT
GGGCGCTATTGTGTCAGCAGGCGACACATCCGTCCTCCACCTGGGGCATGTGGACCACCTGGTGGCAGGC
CAAGGCAACCCCGAGCCAACTGAACTCCCCCATCCATCAGAGGGTAATGATGAGAAGGCTGAAGAGGCGG
GTGAAGGTCGGGGAGACTCCACTGGGGAGGCTGGAGCTGGGGGTGGTGTTGAGCCCAGCCTTGAGCATCT
CCTTGACATCCAAGGCCTGCCCAAAAGACAAGCAGGTGCAGGCAGCAGCAGTCCAGAGGCCCCCCTGAGA
TCTGAGGATAGCACCTGCCTCCCTCCCAGCCCTGGCCTCATCACTGTGCGGCTCAAATTCCTCAATGATA
CCGAGGAGCTGGCTGTGGCTAGGCCAGAGGATACCGTGGGTGCCCTGAAGAGCAAATACTTCCCTGGACA
AGAAAGCCAGATGAAACTGATCTACCAGGGCCGCCTGCTACAAGACCCAGCCCGCACACTGCGTTCTCTG
AACATTACCGACAACTGTGTGATTCACTGCCACCGCTCACCCCCAGGGTCAGCTGTTCCAGGCCCCTCAG
CCTCCTTGGCCCCCTCGGCCACTGAGCCACCCAGCCTTGGTGTCAATGTGGGCAGCCTCATGGTGCCTGT
CTTTGTGGTGCTGTTGGGTGTGGTCTGGTACTTCCGAATCAATTACCGCCAATTCTTCACAGCACCTGCC
ACTGTCTCCCTGGTGGGAGTCACCGTCTTCTTCAGCTTCCTAGTATTTGGGATGTATGGACGATAA

Translation (301 aa):
MELSDVTLIEGVGNEVMVVAGVVVLILALVLAWLSTYVADSGSNQLLGAIVSAGDTSVLHLGHVDHLVAG
QGNPEPTELPHPSEGNDEKAEEAGEGRGDSTGEAGAGGGVEPSLEHLLDIQGLPKRQAGAGSSSPEAPLR
SEDSTCLPPSPGLITVRLKFLNDTEELAVARPEDTVGALKSKYFPGQESQMKLIYQGRLLQDPARTLRSL
NITDNCVIHCHRSPPGSAVPGPSASLAPSATEPPSLGVNVGSLMVPVFVVLLGVVWYFRINYRQFFTAPA
TVSLVGVTVFFSFLVFGMYGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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