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Report for CCDS1178.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1178.1 Public Homo sapiens 1 PYHIN1 24 110 108 CCDS HistoryNCBI Gene:149628Re-query CCDS DB by CCDS ID:1178.1Re-query CCDS DB by GeneID:149628See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1178.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368140.6 ENSP00000357122.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368140.6Link to Ensembl Protein Viewer:ENSP00000357122.1Re-query CCDS DB by Nucleotide ID:ENST00000368140Re-query CCDS DB by Protein ID:ENSP00000357122
Original member Current member NCBI NM_152501.5 NP_689714.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152501.5Link to Protein Sequence:NP_689714.2Re-query CCDS DB by Nucleotide ID:NM_152501Re-query CCDS DB by Protein ID:NP_689714Link to BLAST:NP_689714.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689714.2 492 Q6K0P9-1 492 100% 0 0

Chromosomal Locations for CCDS 1178.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 158936911 158937175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158938397 158938542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158939080 158939247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158941977 158942399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158943790 158943978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158944875 158945042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 158973647 158973766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1479 nt):
ATGGCAAATAACTACAAGAAAATTGTTCTACTGAAAGGATTAGAGGTCATCAATGATTATCATTTTAGAA
TTGTTAAGTCCTTACTGAGTAACGATTTAAAACTTAATCCAAAAATGAAAGAAGAGTATGACAAAATTCA
GATTGCTGACTTGATGGAGGAAAAGTTCCCAGGTGATGCCGGTTTGGGCAAACTAATAGAATTCTTCAAA
GAAATACCAACACTGGGAGACCTTGCTGAAACTCTTAAAAGAGAAAAGTTAAAAGTTGCAAATAAAATTG
AATCCATTCCAGTCAAAGGAATAATCCCATCTAAAAAGACGAAACAGAAAGAAGTGTATCCTGCTACACC
TGCATGCACCCCAAGCAACCGTCTCACAGCTAAAGGAGCAGAGGAGACTCTTGGACCTCAGAAAAGAAAA
AAACCATCTGAAGAAGAGACTGGAACCAAAAGGAGTAAGATGTCCAAAGAGCAGACTCGGCCTTCCTGCT
CTGCAGGAGCCAGCACGTCCACAGCCATGGGCCGTTCCCCACCTCCCCAGACCTCATCATCAGCTCCACC
CAACACTTCCTCAACTGAGAGCCTAAAACCATTGGCCAACCGTCACGCAACTGCCAGTAAAAATATTTTC
CGAGAAGACCCAATAATCGCGATGGTACTAAATGCAACAAAAGTATTTAAATATGAATCCTCAGAAAATG
AGCAAAGAAGAATGTTTCATGCTACAGTGGCTACGCAGACACAGTTCTTTCATGTGAAGGTTTTAAACAT
CAACTTGAAGAGGAAATTCATTAAAAAGAGAATCATCATTATATCAAATTATTCCAAACGTAATAGTCTC
CTAGAGGTGAATGAAGCCTCTTCTGTATCTGAAGCTGGTCCTGACCAAACGTTTGAGGTTCCAAAGGACA
TCATCAGAAGAGCAAAGAAAATTCCGAAGATCAATATTCTTCACAAACAAACTTCAGGATATATTGTATA
TGGATTATTTATGCTACATACGAAAATTGTAAATAGGAAGACGACAATCTATGAAATTCAGGATAAAACA
GGAAGTATGGCTGTAGTAGGAAAAGGAGAATGCCACAATATCCCCTGTGAAAAAGGAGATAAGCTTCGAC
TCTTCTGCTTTCGACTGAGAAAGAGGGAAAATATGTCAAAACTGATGTCAGAAATGCATAGTTTCATCCA
GATACAGAAAAATACAAACCAGAGAAGCCATGACTCCAGGAGCATGGCACTACCCCAGGAACAGAGTCAG
CATCCAAAACCTTCAGAGGCCAGCACAACCCTACCTGAAAGCCATCTCAAGACTCCTCAGATGCCACCAA
CAACCCCATCCAGCAGTTCCTTCACCAAGAAGGATGAAACCCACCCAGGAGCACAGTCATCGCCTGCAAA
CTTTAGAATCACCTCACCAACTGTGGCCCCTCCTCTTTCTTCTGACACTTCCACCAACCGCCATCCAGCA
GTTCCTTAA

Translation (492 aa):
MANNYKKIVLLKGLEVINDYHFRIVKSLLSNDLKLNPKMKEEYDKIQIADLMEEKFPGDAGLGKLIEFFK
EIPTLGDLAETLKREKLKVANKIESIPVKGIIPSKKTKQKEVYPATPACTPSNRLTAKGAEETLGPQKRK
KPSEEETGTKRSKMSKEQTRPSCSAGASTSTAMGRSPPPQTSSSAPPNTSSTESLKPLANRHATASKNIF
REDPIIAMVLNATKVFKYESSENEQRRMFHATVATQTQFFHVKVLNINLKRKFIKKRIIIISNYSKRNSL
LEVNEASSVSEAGPDQTFEVPKDIIRRAKKIPKINILHKQTSGYIVYGLFMLHTKIVNRKTTIYEIQDKT
GSMAVVGKGECHNIPCEKGDKLRLFCFRLRKRENMSKLMSEMHSFIQIQKNTNQRSHDSRSMALPQEQSQ
HPKPSEASTTLPESHLKTPQMPPTTPSSSSFTKKDETHPGAQSSPANFRITSPTVAPPLSSDTSTNRHPA
VP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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