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Report for CCDS11862.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11862.1 Public Homo sapiens 18 PSMG2 24 110 108 CCDS HistoryNCBI Gene:56984Re-query CCDS DB by CCDS ID:11862.1Re-query CCDS DB by GeneID:56984See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11862.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317615.11 ENSP00000325919.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000317615.11Link to Ensembl Protein Viewer:ENSP00000325919.6Re-query CCDS DB by Nucleotide ID:ENST00000317615Re-query CCDS DB by Protein ID:ENSP00000325919
Original member Current member NCBI NM_020232.5 NP_064617.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020232.5Link to Protein Sequence:NP_064617.2Re-query CCDS DB by Nucleotide ID:NM_020232Re-query CCDS DB by Protein ID:NP_064617Link to BLAST:NP_064617.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064617.2 264 Q969U7-1 264 100% 0 0

Chromosomal Locations for CCDS 11862.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 12703108 12703164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12706550 12706721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12712702 12712760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12718517 12718635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12720510 12720683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12724499 12724619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12725439 12725531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (795 nt):
ATGTTCGTTCCCTGCGGGGAGTCGGCCCCCGACCTTGCCGGCTTCACCCTCCTAATGCCAGCAGTATCTG
TTGGAAATGTTGGCCAGCTTGCAATGGATCTGATTATTTCTACACTGAATATGTCTAAGATTGGTTACTT
CTATACCGATTGTCTTGTGCCAATGGTTGGAAACAATCCATATGCGACCACAGAAGGAAATTCAACAGAA
CTTAGCATAAATGCTGAAGTGTATTCATTGCCTTCAAGAAAGCTGGTGGCTCTACAGTTAAGATCCATTT
TTATTAAGTATAAATCAAAGCCATTCTGTGAAAAACTGCTTTCCTGGGTGAAAAGCAGTGGCTGTGCCAG
AGTCATTGTTCTTTCAAGCAGTCATTCATATCAGCGTAATGATCTGCAGCTTCGTAGTACTCCCTTCCGG
TACCTACTTACACCTTCCATGCAAAAAAGTGTTCAAAATAAAATAAAGAGCCTTAACTGGGAAGAAATGG
AAAAAAGCCGGTGCATTCCTGAAATAGATGATTCCGAGTTTTGTATCCGCATTCCGGGAGGAGGTATCAC
AAAAACACTCTATGATGAAAGCTGTTCTAAAGAAATCCAAATGGCAGTTCTGCTGAAATTTGTTTCAGAA
GGGGACAACATCCCAGATGCATTAGGTCTTGTTGAGTATCTTAATGAGTGGCTTCAGATACTCAAACCAC
TTAGCGATGACCCCACAGTATCTGCCTCACGGTGGAAAATACCAAGTTCTTGGAGATTACTCTTTGGCAG
TGGTCTTCCCCCTGCACTTTTCTGA

Translation (264 aa):
MFVPCGESAPDLAGFTLLMPAVSVGNVGQLAMDLIISTLNMSKIGYFYTDCLVPMVGNNPYATTEGNSTE
LSINAEVYSLPSRKLVALQLRSIFIKYKSKPFCEKLLSWVKSSGCARVIVLSSSHSYQRNDLQLRSTPFR
YLLTPSMQKSVQNKIKSLNWEEMEKSRCIPEIDDSEFCIRIPGGGITKTLYDESCSKEIQMAVLLKFVSE
GDNIPDALGLVEYLNEWLQILKPLSDDPTVSASRWKIPSSWRLLFGSGLPPALF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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