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Report for CCDS11914.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11914.1 Public Homo sapiens 18 INO80C 24 110 108 CCDS HistoryNCBI Gene:125476Re-query CCDS DB by CCDS ID:11914.1Re-query CCDS DB by GeneID:125476See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11914.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000334598.12 ENSP00000334473.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000334598.12Link to Ensembl Protein Viewer:ENSP00000334473.6Re-query CCDS DB by Nucleotide ID:ENST00000334598Re-query CCDS DB by Protein ID:ENSP00000334473
Original member Current member NCBI NM_194281.4 NP_919257.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_194281.4Link to Protein Sequence:NP_919257.2Re-query CCDS DB by Nucleotide ID:NM_194281Re-query CCDS DB by Protein ID:NP_919257Link to BLAST:NP_919257.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_919257.2 192 Q6PI98-1 192 100% 0 0

Chromosomal Locations for CCDS 11914.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 35468611 35468742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35478282 35478349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35479300 35479411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35480453 35480563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35497719 35497874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (579 nt):
ATGGCGGCGCAAATTCCAATTGTGGCCACCACTTCCACTCCCGGAATAGTCCGGAACAGCAAGAAGAGGC
CGGCCAGCCCTTCCCACAATGGCAGCAGCGGCGGGGGCTATGGCGCCAGTAAGAAGAAAAAAGCGTCCGC
TTCCAGCTTTGCGCAGGGTATCAGCATGGAAGCCATGAGTGAGAATAAAATGGTGCCCTCTGAGTTTAGC
ACAGGACCTGTGGAAAAAGCTGCCAAACCTTTGCCATTTAAGGATCCCAACTTTGTGCACTCTGGCCACG
GTGGCGCAGTAGCTGGCAAGAAGAACAGAACCTGGAAGAACCTGAAACAAATCCTCGCTTCTGAAAGGGC
ATTGCCGTGGCAACTGAACGATCCTAACTACTTCAGTATTGATGCTCCTCCATCCTTTAAGCCAGCTAAG
AAGTATTCTGATGTTTCAGGTCTGCTTGCCAACTACACAGACCCCCAGAGCAAACTGCGGTTCAGCACCA
TTGAAGAGTTTTCCTACATTCGGAGGCTGCCCTCTGACGTCGTCACCGGCTACCTGGCCCTGAGGAAGGC
CACGAGCATCGTTCCCTGA

Translation (192 aa):
MAAQIPIVATTSTPGIVRNSKKRPASPSHNGSSGGGYGASKKKKASASSFAQGISMEAMSENKMVPSEFS
TGPVEKAAKPLPFKDPNFVHSGHGGAVAGKKNRTWKNLKQILASERALPWQLNDPNYFSIDAPPSFKPAK
KYSDVSGLLANYTDPQSKLRFSTIEEFSYIRRLPSDVVTGYLALRKATSIVP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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