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Report for CCDS11917.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11917.1 Public Homo sapiens 18 RPRD1A 24 110 108 CCDS HistoryNCBI Gene:55197Re-query CCDS DB by CCDS ID:11917.1Re-query CCDS DB by GeneID:55197See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11917.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357384.8 ENSP00000349955.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000357384.8Link to Ensembl Protein Viewer:ENSP00000349955.4Re-query CCDS DB by Nucleotide ID:ENST00000357384Re-query CCDS DB by Protein ID:ENSP00000349955
Original member Current member EBI ENST00000399022.9 ENSP00000381984.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000399022.9Link to Ensembl Protein Viewer:ENSP00000381984.3Re-query CCDS DB by Nucleotide ID:ENST00000399022Re-query CCDS DB by Protein ID:ENSP00000381984
Original member Current member NCBI NM_018170.5 NP_060640.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018170.5Link to Protein Sequence:NP_060640.2Re-query CCDS DB by Nucleotide ID:NM_018170Re-query CCDS DB by Protein ID:NP_060640Link to BLAST:NP_060640.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060640.2 312 Q96P16-1 312 100% 0 0

Chromosomal Locations for CCDS 11917.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 35993151 35993300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36026900 36027075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36027184 36027310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36030808 36030905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36030991 36031097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36033708 36033837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 36067254 36067404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGTCAGCCTTCTCTGAGGCGGCGCTGGAGAAGAAGCTGTCGGAGTTGAGCAACTCGCAGCAGAGCGTGC
AGACCTTGTCCCTGTGGCTCATTCACCACCGTAAACACTCGCGTCCCATCGTCACCGTGTGGGAGCGGGA
GCTGCGGAAAGCCAAACCAAACAGGAAGCTTACTTTTCTCTACCTAGCCAATGATGTCATACAGAACAGC
AAGAGGAAGGGGCCAGAGTTTACAAAAGATTTTGCACCAGTTATAGTGGAGGCTTTTAAGCATGTTTCAA
GTGAAACTGATGAAAGTTGTAAGAAGCACCTTGGAAGAGTGTTATCTATTTGGGAAGAAAGGTCTGTTTA
TGAAAATGATGTATTAGAACAACTTAAACAAGCTCTGTATGGTGATAAGAAGCCTAGGAAGCGAACTTAT
GAACAGATAAAGGTGGATGAAAATGAAAACTGTTCCTCTCTGGGATCTCCAAGTGAACCACCACAGACTC
TAGATCTCGTTAGAGCATTACAAGATCTGGAAAATGCAGCCTCAGGTGATGCAGCAGTTCATCAGAGGAT
AGCTTCTTTACCTGTTGAAGTCCAAGAAGTATCTCTATTAGATAAAATAACAGATAAAGAATCTGGAGAA
AGGCTTTCCAAAATGGTAGAGGATGCGTGTATGTTGCTGGCAGATTACAATGGCAGATTGGCGGCAGAAA
TAGATGATAGAAAGCAACTCACTCGAATGTTAGCAGATTTTCTTCGTTGTCAAAAGGAAGCCCTTGCAGA
GAAAGAGCATAAATTGGAAGAGTACAAGCGCAAGCTAGCCAGAGTTTCCCTGGTGCGCAAAGAACTCAGG
TCCCGGATCCAGAGCCTGCCAGACTTATCTCGATTGCCCAATGTCACTGGCAGCCACATGCACCTGCCCT
TTGCGGGAGACATCTACAGTGAAGATTGA

Translation (312 aa):
MSAFSEAALEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYLANDVIQNS
KRKGPEFTKDFAPVIVEAFKHVSSETDESCKKHLGRVLSIWEERSVYENDVLEQLKQALYGDKKPRKRTY
EQIKVDENENCSSLGSPSEPPQTLDLVRALQDLENAASGDAAVHQRIASLPVEVQEVSLLDKITDKESGE
RLSKMVEDACMLLADYNGRLAAEIDDRKQLTRMLADFLRCQKEALAEKEHKLEEYKRKLARVSLVRKELR
SRIQSLPDLSRLPNVTGSHMHLPFAGDIYSED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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