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Report for CCDS12021.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12021.1 Public Homo sapiens 18 RBFA 24 110 108 CCDS HistoryNCBI Gene:79863Re-query CCDS DB by CCDS ID:12021.1Re-query CCDS DB by GeneID:79863See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12021.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306735.10 ENSP00000305696.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000306735.10Link to Ensembl Protein Viewer:ENSP00000305696.4Re-query CCDS DB by Nucleotide ID:ENST00000306735Re-query CCDS DB by Protein ID:ENSP00000305696
Original member Current member NCBI NM_024805.3 NP_079081.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024805.3Link to Protein Sequence:NP_079081.2Re-query CCDS DB by Nucleotide ID:NM_024805Re-query CCDS DB by Protein ID:NP_079081Link to BLAST:NP_079081.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079081.2 343 Q8N0V3-1 343 100% 0 0

Chromosomal Locations for CCDS 12021.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 80034496 80034653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80036668 80036710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80037330 80037506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80038505 80038617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80042135 80042219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80044212 80044285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80045774 80046155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1032 nt):
ATGTGGGCTGCGGCGGGCGGGCTGTGGCGCTCCCGCGCGGGTCTCCGGGCCCTGTTCCGTAGCCGCGATG
CTGCGCTATTTCCAGGCTGCGAGCGGGGACTTCACTGCTCTGCTGTCTCCTGCAAGAACTGGCTCAAGAA
ATTTGCCTCGAAAACCAAAAAAAAGGTTTGGTATGAAAGTCCTTCCTTGGGTTCTCACTCGACTTACAAA
CCATCCAAGTTGGAATTCCTCATGAGGAGCACCTCAAAGAAAACCAGGAAGGAAGACCATGCGCGCCTGA
GGGCCCTGAACGGCCTCCTCTATAAGGCACTGACAGACCTGCTGTGTACCCCTGAAGTGAGTCAGGAGCT
GTATGACCTTAACGTGGAGCTCTCCAAGGTTTCCCTGACTCCAGACTTCTCAGCCTGCCGAGCGTACTGG
AAGACAACGCTCTCTGCTGAGCAGAACGCACACATGGAGGCTGTCCTGCAGAGAAGTGCCGCGCACATGA
GGCACCTTTTGATGTCCCAGCAGACCCTGAGGAATGTGCCACCGATAGTGTTTGTTCAAGACAAGGGAAA
TGCAGCTCTAGCTGAGCTTGATCAGTTACTGGCAGTCGCAGACTTTGGACCCCGGGATGAAAGAGACAAC
TTTGTACAAAATGATTTCAGGGACCCTGATGCCCCACAACCCTGCGGCACCACAGAGCCGACCACAAGCT
CCAGTCTGTGTGGGATCGATCATGAGGCGCTCAACAAGCAGATTATGGAGTACAAAAGGAGGAAAGATAA
AGGGCTCGGGGGCCTGGTGTGGCAGGGGCAGGTGGCTGAGCTGACAACGCAGATGAAAAAGGGAAGGAAG
AGGGCCAAGCCCCGCCTGGAGCAGGACAGCTCCCTCAAGAGTTACCTGTCAGGCGAGGAGGTTGAAGATG
ACCTGGACCTGGTTGGTGCCCCGGAGTACGAATGCTATGCCCCGGACACAGAGGAGTTGGAGGCAGAGAG
AGGAGGTGGCAGAACAGAGGATGGCCACAGCTGCGGAGCAAGCAGGGAGTAG

Translation (343 aa):
MWAAAGGLWRSRAGLRALFRSRDAALFPGCERGLHCSAVSCKNWLKKFASKTKKKVWYESPSLGSHSTYK
PSKLEFLMRSTSKKTRKEDHARLRALNGLLYKALTDLLCTPEVSQELYDLNVELSKVSLTPDFSACRAYW
KTTLSAEQNAHMEAVLQRSAAHMRHLLMSQQTLRNVPPIVFVQDKGNAALAELDQLLAVADFGPRDERDN
FVQNDFRDPDAPQPCGTTEPTTSSSLCGIDHEALNKQIMEYKRRKDKGLGGLVWQGQVAELTTQMKKGRK
RAKPRLEQDSSLKSYLSGEEVEDDLDLVGAPEYECYAPDTEELEAERGGGRTEDGHSCGASRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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