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Report for CCDS12144.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12144.1 Public Homo sapiens 19 HSD11B1L 24 110 108 CCDS HistoryNCBI Gene:374875Re-query CCDS DB by CCDS ID:12144.1Re-query CCDS DB by GeneID:374875See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12144.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000301382.8 ENSP00000301382.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000301382.8Link to Ensembl Protein Viewer:ENSP00000301382.4Re-query CCDS DB by Nucleotide ID:ENST00000301382Re-query CCDS DB by Protein ID:ENSP00000301382
Original member Current member NCBI NM_198705.3 NP_941994.1 Accepted alive Link to Nucleotide Sequence:NM_198705.3Link to Protein Sequence:NP_941994.1Re-query CCDS DB by Nucleotide ID:NM_198705Re-query CCDS DB by Protein ID:NP_941994Link to BLAST:NP_941994.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_941994.1 205 Q7Z5J1-6 205 100% 0 0

Chromosomal Locations for CCDS 12144.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 5684833 5684905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5686900 5686991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5687282 5687375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5687503 5687668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5687753 5687945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGAAGGTGCTTCTCCTCACAGGGCTGGGGGCCCTGTTCTTCGCCTATTATTGGGATGACAACTTCGACC
CAGGCGGGCTGGACTACCTCGTGCTGAACCACATCGGCGGCGCCCCGGCCGGCACGCGAGCCCGCAGCCC
CCAGGCAACTCGCTGGCTCATGCAGGTAAACTTTGTGAGCTACGTGCAACTGACGTCGCGGGCGCTGCCC
AGCCTGACGGACAGCAAGGGCTCCCTGGTGGTGGTGTCCTCGCTGCTCGGCCGCGTGCCCACGTCGTTCT
CCACTCCCTACTCGGCGGCCAAGTTTGCGCTGGACGGCTTCTTCGGCTCCCTGCGGCGGGAGCTGGACGT
GCAGGACGTGAACGTGGCCATCACCATGTGCGTCCTGGGCCTCCGAGATCGCGCCTCCGCCGCCGAGGCA
GTCAGGGGAGTCACGAGGGTCAAGGCGGCCCCGGGGCCCAAGGCAGCCCTGGCCGTGATCCGCGGCGGCG
CCACGCGCGCGGCCGGCGTCTTCTACCCGTGGCGTTTCCGCCTGCTGTGCTTGCTCCGGCGCTGGCTACC
GCGCCCGCGGGCCTGGTTTATCCGCCAGGAGCTCAACGTCACGGCCGCGGCAGCCTGA

Translation (205 aa):
MKVLLLTGLGALFFAYYWDDNFDPGGLDYLVLNHIGGAPAGTRARSPQATRWLMQVNFVSYVQLTSRALP
SLTDSKGSLVVVSSLLGRVPTSFSTPYSAAKFALDGFFGSLRRELDVQDVNVAITMCVLGLRDRASAAEA
VRGVTRVKAAPGPKAALAVIRGGATRAAGVFYPWRFRLLCLLRRWLPRPRAWFIRQELNVTAAAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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