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Report for CCDS12262.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12262.1 Public Homo sapiens 19 ECSIT 24 110 108 CCDS HistoryNCBI Gene:51295Re-query CCDS DB by CCDS ID:12262.1Re-query CCDS DB by GeneID:51295See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12262.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000270517.12 ENSP00000270517.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000270517.12Link to Ensembl Protein Viewer:ENSP00000270517.6Re-query CCDS DB by Nucleotide ID:ENST00000270517Re-query CCDS DB by Protein ID:ENSP00000270517
Original member Current member EBI ENST00000688351.1 ENSP00000508502.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000688351.1Link to Ensembl Protein Viewer:ENSP00000508502.1Re-query CCDS DB by Nucleotide ID:ENST00000688351Re-query CCDS DB by Protein ID:ENSP00000508502
Original member Current member EBI ENST00000690346.1 ENSP00000510792.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000690346.1Link to Ensembl Protein Viewer:ENSP00000510792.1Re-query CCDS DB by Nucleotide ID:ENST00000690346Re-query CCDS DB by Protein ID:ENSP00000510792
Original member Current member NCBI NM_016581.5 NP_057665.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016581.5Link to Protein Sequence:NP_057665.2Re-query CCDS DB by Nucleotide ID:NM_016581Re-query CCDS DB by Protein ID:NP_057665Link to BLAST:NP_057665.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057665.2 431 Q9BQ95-1 431 100% 0 0

Chromosomal Locations for CCDS 12262.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11506184 11506428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11507457 11507562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11507702 11507850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11507991 11508048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11513056 11513279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11513804 11514221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11519075 11519170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1296 nt):
ATGAGCTGGGTCCAGGCCACCCTACTGGCCCGAGGCCTCTGTAGGGCCTGGGGAGGCACCTGCGGGGCCG
CCCTCACAGGAACCTCCATCTCTCAGGTCCCTCGCCGGCTCCCTCGGGGCCTCCACTGCAGCGCAGCTGC
CCATAGCTCTGAACAGTCCCTGGTTCCCAGCCCACCGGAACCCCGGCAGAGGCCCACCAAGGCTCTGGTG
CCCTTTGAGGACCTGTTTGGGCAGGCGCCTGGTGGGGAACGGGACAAGGCGAGCTTCCTGCAGACGGTGC
AGAAATTTGCGGAGCACAGCGTGCGTAAGCGGGGCCACATTGACTTCATCTACCTGGCCCTGCGCAAGAT
GCGGGAGTATGGTGTCGAGCGGGACCTGGCTGTGTACAACCAGCTGCTCAACATCTTCCCCAAGGAGGTC
TTCCGGCCTCGCAACATCATCCAGCGCATCTTCGTCCACTACCCTCGGCAGCAGGAGTGTGGGATTGCTG
TCCTGGAGCAGATGGAGAACCACGGTGTGATGCCCAACAAGGAGACGGAGTTCCTGCTGATTCAGATCTT
TGGACGCAAAAGCTACCCCATGCTCAAGTTGGTGCGCCTGAAGCTGTGGTTCCCTCGATTCATGAACGTC
AACCCCTTCCCAGTGCCCCGGGACCTGCCCCAGGACCCTGTGGAGCTGGCCATGTTTGGCCTGCGGCACA
TGGAGCCTGACCTTAGTGCCAGGGTCACCATCTACCAGGTTCCTTTGCCCAAAGACTCAACAGGTGCAGC
AGATCCCCCCCAGCCCCACATCGTAGGAATCCAGAGTCCCGATCAGCAGGCCGCCCTGGCCCGCCACAAT
CCAGCCCGGCCTGTCTTTGTTGAGGGCCCCTTCTCCCTGTGGCTCCGCAACAAGTGTGTGTATTACCACA
TCCTCAGAGCTGACTTGCTGCCCCCGGAGGAGAGGGAAGTGGAAGAGACGCCGGAGGAGTGGAACCTCTA
CTACCCGATGCAGCTGGACCTGGAGTATGTGAGGAGTGGCTGGGACAACTACGAGTTTGACATCAATGAA
GTGGAGGAAGGCCCTGTCTTCGCCATGTGCATGGCGGGTGCTCATGACCAGGCGACGATGGCTAAGTGGA
TCCAGGGCCTGCAGGAGACCAACCCAACCCTGGCCCAGATCCCCGTGGTCTTCCGCCTCGCCGGGTCCAC
CCGGGAGCTCCAGACATCCTCTGCAGGGCTGGAGGAGCCGCCCCTGCCCGAGGACCACCAGGAAGAAGAC
GACAACCTGCAGCGACAGCAGCAGGGCCAGAGCTAG

Translation (431 aa):
MSWVQATLLARGLCRAWGGTCGAALTGTSISQVPRRLPRGLHCSAAAHSSEQSLVPSPPEPRQRPTKALV
PFEDLFGQAPGGERDKASFLQTVQKFAEHSVRKRGHIDFIYLALRKMREYGVERDLAVYNQLLNIFPKEV
FRPRNIIQRIFVHYPRQQECGIAVLEQMENHGVMPNKETEFLLIQIFGRKSYPMLKLVRLKLWFPRFMNV
NPFPVPRDLPQDPVELAMFGLRHMEPDLSARVTIYQVPLPKDSTGAADPPQPHIVGIQSPDQQAALARHN
PARPVFVEGPFSLWLRNKCVYYHILRADLLPPEEREVEETPEEWNLYYPMQLDLEYVRSGWDNYEFDINE
VEEGPVFAMCMAGAHDQATMAKWIQGLQETNPTLAQIPVVFRLAGSTRELQTSSAGLEEPPLPEDHQEED
DNLQRQQQGQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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