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Report for CCDS12413.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12413.2 Public Homo sapiens 19 ZNF43 24 110 108 CCDS HistoryNCBI Gene:7594Re-query CCDS DB by CCDS ID:12413.2Re-query CCDS DB by GeneID:7594See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 12413.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354959.9 ENSP00000347045.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000354959.9Link to Ensembl Protein Viewer:ENSP00000347045.4Re-query CCDS DB by Nucleotide ID:ENST00000354959Re-query CCDS DB by Protein ID:ENSP00000347045
Original member Current member NCBI NM_003423.4 NP_003414.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003423.4Link to Protein Sequence:NP_003414.2Re-query CCDS DB by Nucleotide ID:NM_003423Re-query CCDS DB by Protein ID:NP_003414Link to BLAST:NP_003414.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003414.2 809 P17038-1 809 100% 0 0

Chromosomal Locations for CCDS 12413.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 21807607 21809807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 21817888 21817986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 21819095 21819221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 21836036 21836038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2430 nt):
ATGGGACCATTGACATTTATGGATGTGGCCATAGAATTCTGTCTGGAGGAGTGGCAATGCCTGGACATTG
CACAGCAGAATTTATATAGGAATGTGATGTTAGAGAACTACAGAAACCTGGTCTTCCTGGGTATTGCTGT
CTCTAAGCCAGACCTGATCACCTGTCTGGAGCAAGAAAAAGAGCCTTGGGAGCCTATGAGGAGACATGAA
ATGGTAGCCAAACCCCCAGTTATGTGTTCTCATTTTACCCAAGACTTTTGGCCAGAGCAGCATATAAAAG
ATCCTTTCCAAAAAGCGACACTGAGAAGATATAAAAACTGTGAACATAAAAATGTACATTTAAAAAAAGA
CCATAAAAGTGTGGATGAGTGTAAGGTGCACAGAGGAGGTTATAATGGATTTAACCAATGTTTGCCAGCT
ACCCAGAGCAAAATATTTCTATTTGATAAATGTGTGAAAGCCTTTCATAAATTTTCAAATTCAAACAGAC
ATAAGATAAGCCATACTGAAAAAAAACTTTTCAAATGCAAAGAATGTGGCAAATCATTTTGCATGCTTCC
ACATCTAGCTCAACATAAAATAATTCATACCAGAGTGAATTTCTGCAAATGTGAAAAATGTGGAAAAGCT
TTTAACTGCCCTTCAATCATCACTAAACATAAGAGAATTAATACTGGAGAGAAACCCTACACATGTGAAG
AATGTGGCAAAGTCTTTAATTGGTCCTCACGCCTTACTACACATAAAAAAAATTATACTAGATACAAACT
CTACAAATGTGAAGAATGTGGCAAAGCTTTTAACAAGTCCTCAATCCTTACTACCCATAAGATAATTCGC
ACTGGAGAGAAATTCTACAAATGTAAAGAATGTGCCAAAGCTTTTAACCAATCCTCAAACCTTACTGAAC
ATAAGAAAATTCATCCTGGAGAGAAACCTTACAAATGTGAAGAATGTGGCAAAGCCTTTAACTGGCCCTC
AACTCTTACTAAACATAAGAGAATTCATACTGGAGAGAAACCCTACACATGTGAAGAATGTGGCAAAGCC
TTTAACCAGTTCTCAAACCTTACTACACATAAGAGAATCCATACTGCAGAGAAATTCTATAAATGTACAG
AATGTGGTGAAGCTTTTAGCCGGTCCTCAAACCTTACTAAACATAAGAAAATTCATACTGAAAAGAAACC
CTACAAATGTGAAGAATGTGGCAAAGCTTTTAAGTGGTCCTCAAAGCTTACTGAACATAAGTTAACTCAT
ACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAACTGGCCCTCAACCCTTACTAAAC
ATAACAGAATTCATACTGGAGAGAAACCCTACAAATGTGAAGTATGTGGCAAAGCCTTTAACCAGTTCTC
AAACCTTACTACACATAAGAGAATTCATACTGCAGAAAAACCGTACAAATGTGAAGAATGTGGCAAAGCT
TTTAGCCGGTCCTCAAACCTTACTAAACATAAGAAAATTCACATTGAAAAGAAACCCTACAAATGTGAAG
AATGTGGCAAAGCTTTTAAGTGGTCCTCAAAGCTTACTGAACATAAGATAACTCATACTGGAGAGAAACC
CTACAAATGTGAAGAATGTGGCAAAGCTTTTAACCATTTCTCAATCCTTACCAAACATAAGAGGATTCAT
ACTGGAGAGAAACCCTACAAGTGTGAAGAATGTGGCAAAGCTTTTACCCAATCCTCAAACCTTACTACAC
ATAAGAAAATTCATACTGGAGAGAAATTCTACAAATGTGAAGAATGTGGCAAAGCTTTTACCCAATCTTC
AAACCTTACTACACATAAAAAAATTCATACTGGAGGAAAACCCTACAAATGTGAAGAATGTGGCAAAGCT
TTTAACCAGTTCTCAACTCTTACTAAACATAAGATAATTCACACTGAGGAGAAACCCTACAAATGTGAAG
AATGTGGCAAAGCCTTTAAGTGGTCCTCAACCCTTACTAAACATAAGATAATTCATACTGGAGAGAAACC
CTACAAATGTGAAGAATGTGGCAAAGCTTTTAAACTGTCCTCAACCCTTTCTACACATAAGATTATTCAT
ACTGGAGAGAAACCCTACAAATGTGAAAAATGTGGCAAAGCTTTTAACCGATCCTCAAACCTTATTGAAC
ATAAGAAAATTCATACTGGAGAGCAACCCTACAAATGTGAAGAATGTGGCAAAGCATTTAACTATTCCTC
ACACCTTAATACACATAAGAGAATTCATACTAAAGAGCAACCCTACAAATGTAAAGAATGTGGCAAAGCT
TTCAACCAATATTCAAACCTTACTACACATAACAAAATTCATACTGGAGAGAAACTCTACAAACCTGAAG
ATGTGACAGTGATTTTGACAACACCTCAAACTTTTTCAAACATAAAATAA

Translation (809 aa):
MGPLTFMDVAIEFCLEEWQCLDIAQQNLYRNVMLENYRNLVFLGIAVSKPDLITCLEQEKEPWEPMRRHE
MVAKPPVMCSHFTQDFWPEQHIKDPFQKATLRRYKNCEHKNVHLKKDHKSVDECKVHRGGYNGFNQCLPA
TQSKIFLFDKCVKAFHKFSNSNRHKISHTEKKLFKCKECGKSFCMLPHLAQHKIIHTRVNFCKCEKCGKA
FNCPSIITKHKRINTGEKPYTCEECGKVFNWSSRLTTHKKNYTRYKLYKCEECGKAFNKSSILTTHKIIR
TGEKFYKCKECAKAFNQSSNLTEHKKIHPGEKPYKCEECGKAFNWPSTLTKHKRIHTGEKPYTCEECGKA
FNQFSNLTTHKRIHTAEKFYKCTECGEAFSRSSNLTKHKKIHTEKKPYKCEECGKAFKWSSKLTEHKLTH
TGEKPYKCEECGKAFNWPSTLTKHNRIHTGEKPYKCEVCGKAFNQFSNLTTHKRIHTAEKPYKCEECGKA
FSRSSNLTKHKKIHIEKKPYKCEECGKAFKWSSKLTEHKITHTGEKPYKCEECGKAFNHFSILTKHKRIH
TGEKPYKCEECGKAFTQSSNLTTHKKIHTGEKFYKCEECGKAFTQSSNLTTHKKIHTGGKPYKCEECGKA
FNQFSTLTKHKIIHTEEKPYKCEECGKAFKWSSTLTKHKIIHTGEKPYKCEECGKAFKLSSTLSTHKIIH
TGEKPYKCEKCGKAFNRSSNLIEHKKIHTGEQPYKCEECGKAFNYSSHLNTHKRIHTKEQPYKCKECGKA
FNQYSNLTTHNKIHTGEKLYKPEDVTVILTTPQTFSNIK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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