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Report for CCDS12512.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12512.1 Public Homo sapiens 19 YIF1B 24 110 108 CCDS HistoryNCBI Gene:90522Re-query CCDS DB by CCDS ID:12512.1Re-query CCDS DB by GeneID:90522See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12512.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392124.7 ENSP00000375971.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392124.7Link to Ensembl Protein Viewer:ENSP00000375971.2Re-query CCDS DB by Nucleotide ID:ENST00000392124Re-query CCDS DB by Protein ID:ENSP00000375971
Original member Current member EBI ENST00000591784.5 ENSP00000465230.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000591784.5Link to Ensembl Protein Viewer:ENSP00000465230.1Re-query CCDS DB by Nucleotide ID:ENST00000591784Re-query CCDS DB by Protein ID:ENSP00000465230
Original member Current member EBI ENST00000592694.5 ENSP00000466428.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000592694.5Link to Ensembl Protein Viewer:ENSP00000466428.1Re-query CCDS DB by Nucleotide ID:ENST00000592694Re-query CCDS DB by Protein ID:ENSP00000466428
Original member Current member NCBI NM_001145462.2 NP_001138934.1 Accepted alive Link to Nucleotide Sequence:NM_001145462.2Link to Protein Sequence:NP_001138934.1Re-query CCDS DB by Nucleotide ID:NM_001145462Re-query CCDS DB by Protein ID:NP_001138934Link to BLAST:NP_001138934.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138934.1 283 Q5BJH7-2 283 100% 0 0

Chromosomal Locations for CCDS 12512.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 38305352 38305507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38307428 38307521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38307597 38307752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38308792 38308849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38308979 38309057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38309224 38309328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 38309405 38309608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (852 nt):
ATGGCCGACCCCCACCAGCTTTTCGATGACACAAGTTCAGCCCAGAGCCGGGGCTATGGGGCCCAGCGGG
CACCTGGTGGCCTGAGTTATCCTGCAGCCTCTCCCACGCCCCATGCAGCCTTCCTGGCTGACCCGGTGTC
CAACATGGCCATGGCCTATGGGAGCAGCCTGGCCGCGCAGGGCAAGGAGCTGGTGGATAAGAACATCGAC
CGCTTCATCCCCATCACCAAGCTCAAGTATTACTTTGCTGTGGACACCATGTATGTGGGCAGAAAGCTGG
GCCTGCTGTTCTTCCCCTACCTACACCAGGACTGGGAAGTGCAGTACCAACAGGACACCCCGGTGGCCCC
CCGCTTTGACGTCAATGCCCCGGACCTCTACATTCCAGCAATGGCTTTCATCACCTACGTTTTGGTGGCT
GGTCTTGCGCTGGGGACCCAGGATAGGTTCTCCCCAGACCTCCTGGGGCTGCAAGCGAGCTCAGCCCTGG
CCTGGCTGACCCTGGAGGTGCTGGCCATCCTGCTCAGCCTCTATCTGGTCACTGTCAACACCGACCTCAC
CACCATCGACCTGGTGGCCTTCTTGGGCTACAAATATGTCGGGATGATTGGCGGGGTCCTCATGGGCCTG
CTCTTCGGGAAGATTGGCTACTACCTGGTGCTGGGCTGGTGCTGCGTAGCCATCTTTGTGTTCATGATCC
GGACGCTGCGGCTGAAGATCTTGGCAGACGCAGCAGCTGAGGGGGTCCCGGTGCGTGGGGCCCGGAACCA
GCTGCGCATGTACCTGACCATGGCGGTGGCGGCGGCGCAGCCTATGCTCATGTACTGGCTCACCTTCCAC
CTGGTGCGGTGA

Translation (283 aa):
MADPHQLFDDTSSAQSRGYGAQRAPGGLSYPAASPTPHAAFLADPVSNMAMAYGSSLAAQGKELVDKNID
RFIPITKLKYYFAVDTMYVGRKLGLLFFPYLHQDWEVQYQQDTPVAPRFDVNAPDLYIPAMAFITYVLVA
GLALGTQDRFSPDLLGLQASSALAWLTLEVLAILLSLYLVTVNTDLTTIDLVAFLGYKYVGMIGGVLMGL
LFGKIGYYLVLGWCCVAIFVFMIRTLRLKILADAAAEGVPVRGARNQLRMYLTMAVAAAQPMLMYWLTFH
LVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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