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Report for CCDS12709.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12709.1 Public Homo sapiens 19 CABP5 24 110 108 CCDS HistoryNCBI Gene:56344Re-query CCDS DB by CCDS ID:12709.1Re-query CCDS DB by GeneID:56344See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12709.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000293255.3 ENSP00000293255.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000293255.3Link to Ensembl Protein Viewer:ENSP00000293255.1Re-query CCDS DB by Nucleotide ID:ENST00000293255Re-query CCDS DB by Protein ID:ENSP00000293255
Original member Current member NCBI NM_019855.5 NP_062829.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019855.5Link to Protein Sequence:NP_062829.1Re-query CCDS DB by Nucleotide ID:NM_019855Re-query CCDS DB by Protein ID:NP_062829Link to BLAST:NP_062829.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062829.1 173 Q9NP86 173 100% 0 0

Chromosomal Locations for CCDS 12709.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 48030557 48030582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48034215 48034362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48039208 48039317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48040605 48040748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48041573 48041603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 48043860 48043922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (522 nt):
ATGCAGTTCCCCATGGGCCCCGCCTGCATCTTCTTGAGGAAAGGCATTGCTGAGAAACAGCGGGAAAGAC
CACTGGGACAAGATGAGATTGAAGAGCTGCGGGAAGCATTTCTTGAGTTCGATAAGGACCGAGATGGGTT
CATCTCTTGTAAGGATCTGGGGAATCTCATGAGGACGATGGGTTACATGCCCACGGAGATGGAACTGATT
GAGCTCGGCCAGCAAATCCGCATGAACCTGGGTGGCCGTGTAGACTTTGATGACTTTGTGGAGCTGATGA
CCCCCAAATTGCTTGCAGAAACAGCTGGGATGATCGGTGTCCAGGAGATGCGGGATGCCTTCAAGGAGTT
TGACACGAATGGAGATGGGGAGATCACCCTGGTGGAGCTACAGCAGGCCATGCAGAGACTCCTGGGGGAG
CGGCTCACCCCCCGGGAGATCTCTGAGGTTGTCCGGGAGGCTGATGTTAATGGAGACGGCACAGTTGACT
TTGAAGAGTTTGTGAAGATGATGTCTCGCTGA

Translation (173 aa):
MQFPMGPACIFLRKGIAEKQRERPLGQDEIEELREAFLEFDKDRDGFISCKDLGNLMRTMGYMPTEMELI
ELGQQIRMNLGGRVDFDDFVELMTPKLLAETAGMIGVQEMRDAFKEFDTNGDGEITLVELQQAMQRLLGE
RLTPREISEVVREADVNGDGTVDFEEFVKMMSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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