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Report for CCDS12955.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12955.1 Public Homo sapiens 19 ZNF530 24 110 108 CCDS HistoryNCBI Gene:348327Re-query CCDS DB by CCDS ID:12955.1Re-query CCDS DB by GeneID:348327See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12955.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000332854.11 ENSP00000332861.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000332854.11Link to Ensembl Protein Viewer:ENSP00000332861.5Re-query CCDS DB by Nucleotide ID:ENST00000332854Re-query CCDS DB by Protein ID:ENSP00000332861
Original member Current member EBI ENST00000600619.1 ENSP00000472564.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000600619.1Link to Ensembl Protein Viewer:ENSP00000472564.1Re-query CCDS DB by Nucleotide ID:ENST00000600619Re-query CCDS DB by Protein ID:ENSP00000472564
Original member Current member NCBI NM_020880.5 NP_065931.3 Accepted alive Link to Nucleotide Sequence:NM_020880.5Link to Protein Sequence:NP_065931.3Re-query CCDS DB by Nucleotide ID:NM_020880Re-query CCDS DB by Protein ID:NP_065931Link to BLAST:NP_065931.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065931.3 599 Q6P9A1 599 100% 0 0

Chromosomal Locations for CCDS 12955.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 57600105 57600134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57604277 57604406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 57605686 57607325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1800 nt):
ATGGCGGCGGCACTGAGGGCCCCGACCCAGCAGGTTTTTGTAGCCTTTGAGGATGTGGCCATTTACTTCT
CCCAGGAGGAGTGGGAGCTCCTTGATGAGATGCAGAGGCTCCTGTACCGCGATGTGATGCTGGAGAACTT
TGCAGTTATGGCATCCCTAGGTTGCTGGTGTGGAGCAGTAGATGAGGGGACGCCTTCTGCAGAGAGCGTT
TCTGTGGAAGAACTGTCACAGGGCAGGACTCCAAAGGCAGATACATCCACTGATAAGAGTCACCCCTGTG
AGATTTGTACCCCAGTCCTGAGAGACATTTTACAAATGATTGAGCTCCATGCCTCACCCTGTGGACAGAA
ATTGTACTTGGGTGGAGCATCAAGAGATTTCTGGATGAGTTCAAACCTTCACCAGCTCCAGAAGCTTGAT
AATGGAGAGAAGCTCTTTAAAGTGGATGGGGACCAGGCCTCATTTATGATGAACTGCAGGTTCCATGTGT
CAGGAAAACCCTTCACGTTTGGGGAAGTCGGGAGGGACTTTTCAGCCACCTCAGGACTTCTCCAGCATCA
GGTGACTCCCACCATTGAGAGACCACACAGCAGGATTAGACACTTGAGAGTTCCCACTGGACGAAAGCCT
CTCAAATACACTGAATCCAGGAAATCTTTTAGAGAGAAATCTGTATTCATTCAACACCAAAGAGCTGACT
CTGGAGAAAGGCCTTACAAGTGCAGTGAATGTGGGAAATCCTTTAGTCAAAGTTCTGGCTTTCTTCGACA
CAGGAAAGCACACGGTAGAACAAGGACTCATGAATGTAGTGAATGTGGGAAATCATTTAGTCGCAAAACT
CACCTAACTCAACACCAAAGAGTTCACACTGGAGAAAGGCCTTATGACTGCAGTGAATGTGGCAAATCCT
TTCGCCAGGTATCTGTCCTCATTCAACATCAACGAGTTCACACTGGAGAAAGGCCTTATGAGTGCAGTGA
ATGTGGGAAATCTTTTAGCCACAGCACTAACCTCTATCGTCACAGGAGTGCCCACACTAGCACAAGGCCT
TATGAGTGCAGTGAATGTGGAAAATCCTTTAGCCATAGCACTAACCTCTTTCGACACTGGAGAGTTCACA
CTGGAGTAAGGCCTTATGAGTGTAGTGAATGTGGGAAAGCATTTAGTTGCAATATCTACCTTATTCACCA
CCAAAGATTTCACACTGGAGAAAGACCTTATGTGTGCAGTGAATGTGGGAAATCATTTGGCCAGAAATCT
GTCCTCATTCAACACCAAAGAGTTCACACTGGAGAAAGGCCTTATGAGTGCAGTGAATGTGGGAAAGTTT
TTAGCCAAAGCTCTGGCCTCTTTCGACACAGAAGAGCTCACACTAAAACAAAGCCTTATGAGTGCAGTGA
ATGTGAAAAATCATTTAGTTGCAAAACTGACCTCATTCGACACCAGACAGTTCACACTGGAGAAAGGCCT
TATGAGTGCAGTGTATGTGGGAAATCTTTTATCCGAAAAACCCACCTCATTCGACACCAGACTGTTCACA
CTAATGAAAGGCCTTATGAGTGCGATGAATGTGGGAAATCCTATAGCCAAAGCTCTGCCCTCCTTCAGCA
TAGGAGAGTTCACACTGGAGAAAGGCCTTATGAGTGCAGAGAATGTGGGAAATCTTTTACCCGCAAAAAT
CACCTCATTCAACACAAGACAGTTCACACTGGAGAAAGGCCTTATGAATGCAGTGAATGTGGAAAATCCT
TTAGCCAAAGCTCTGGCCTCTTAAGACACAGAAGAGTTCATGTGCAGTGA

Translation (599 aa):
MAAALRAPTQQVFVAFEDVAIYFSQEEWELLDEMQRLLYRDVMLENFAVMASLGCWCGAVDEGTPSAESV
SVEELSQGRTPKADTSTDKSHPCEICTPVLRDILQMIELHASPCGQKLYLGGASRDFWMSSNLHQLQKLD
NGEKLFKVDGDQASFMMNCRFHVSGKPFTFGEVGRDFSATSGLLQHQVTPTIERPHSRIRHLRVPTGRKP
LKYTESRKSFREKSVFIQHQRADSGERPYKCSECGKSFSQSSGFLRHRKAHGRTRTHECSECGKSFSRKT
HLTQHQRVHTGERPYDCSECGKSFRQVSVLIQHQRVHTGERPYECSECGKSFSHSTNLYRHRSAHTSTRP
YECSECGKSFSHSTNLFRHWRVHTGVRPYECSECGKAFSCNIYLIHHQRFHTGERPYVCSECGKSFGQKS
VLIQHQRVHTGERPYECSECGKVFSQSSGLFRHRRAHTKTKPYECSECEKSFSCKTDLIRHQTVHTGERP
YECSVCGKSFIRKTHLIRHQTVHTNERPYECDECGKSYSQSSALLQHRRVHTGERPYECRECGKSFTRKN
HLIQHKTVHTGERPYECSECGKSFSQSSGLLRHRRVHVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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