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Report for CCDS13274.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13274.1 Public Homo sapiens 20 DLGAP4 24 110 108 CCDS HistoryNCBI Gene:22839Re-query CCDS DB by CCDS ID:13274.1Re-query CCDS DB by GeneID:22839See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13274.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373913.7 ENSP00000363023.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373913.7Link to Ensembl Protein Viewer:ENSP00000363023.3Re-query CCDS DB by Nucleotide ID:ENST00000373913Re-query CCDS DB by Protein ID:ENSP00000363023
Original member Current member NCBI NM_014902.6 NP_055717.2 Accepted alive Link to Nucleotide Sequence:NM_014902.6Link to Protein Sequence:NP_055717.2Re-query CCDS DB by Nucleotide ID:NM_014902Re-query CCDS DB by Protein ID:NP_055717Link to BLAST:NP_055717.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055717.2 989 Q9Y2H0-1 989 100% 0 0

Chromosomal Locations for CCDS 13274.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 36431718 36432716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36436109 36436350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36439754 36439868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36442727 36442777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36446697 36446937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36496705 36497066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36499242 36499321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36500199 36500611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36524250 36524341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36525851 36526006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36526813 36527031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2970 nt):
ATGAAAGGCCTCGGTGACAGCCGCCCCCGCCACCTCTCCGACAGCCTAGACCCACCCCACGAGCCCCTGT
TTGCAGGGACCGACCGCAACCCCTACCTGCTGTCGCCCACGGAGGCCTTCGCCCGCGAGGCCCGCTTCCC
CGGGCAGAACACCCTGCCAGGAGATGGCCTCTTTCCCCTCAACAACCAGCTGCCCCCGCCCAGCAGCACC
TTTCCCCGCATCCACTACAACTCCCACTTCGAGGTGCCAGAGGAGAGCCCCTTCCCCAGCCATGCCCAAG
CCACCAAGATCAACCGGCTGCCCGCCAACCTCCTGGACCAGTTTGAGAAGCAGCTGCCCATCCACCGTGA
TGGCTTCAGCACCCTCCAATTTCCCCGTGGCGAGGCCAAGGCCCGTGGTGAGAGCCCTGGCCGCATCCGC
CACCTGGTCCACTCAGTCCAGCGGCTTTTCTTCACCAAGGCACCCTCACTGGAGGGCACAGCGGGCAAGG
TCGGTGGCAATGGCAGCAAGAAGGGTGGCATGGAGGACGGCAAGGGCCGGAGGGCCAAAAGCAAGGAGCG
GGCCAAGGCTGGGGAGCCCAAACGGCGCAGCCGCTCCAACATCTCAGGCTGGTGGAGCTCCGATGACAAC
TTGGACGGCGAGGCCGGCGCCTTCCGCAGCAGTGGCCCAGCCTCTGGGCTGATGACACTAGGCCGCCAGG
CAGAACGCAGCCAGCCACGCTACTTCATGCACGCCTACAACACCATCAGTGGGCACATGCTCAAAACCAC
CAAGAACAACACTACTGAGCTGACTGCCCCACCACCCCCGCCCGCACCCCCAGCCACCTGCCCCAGCCTT
GGGGTGGGCACTGACACCAACTACGTCAAACGGGGCTCCTGGTCCACTCTGACCCTCAGCCACGCCCACG
AGGTCTGCCAGAAGACCTCAGCCACCTTGGATAAGAGCCTGCTCAAGTCCAAATCCTGCCACCAGGGTCT
AGCCTACCATTACCTGCAGGTGCCCGGCGGCGGCGGCGAGTGGAGCACCACGCTGCTGTCCCCACGCGAG
ACGGATGCCGCGGCCGAGGGCCCTATCCCGTGCCGGCGCATGCGCAGCGGCAGCTACATCAAGGCCATGG
GCGACGAGGACAGCGACGAGTCCGGCGGCAGCCCCAAGCCCTCACCCAAGACCGCGGCGCGGCGCCAGAG
CTATCTGAGGGCCACGCAGCAGTCGCTGGGAGAGCAGAGCAACCCCCGCAGGAGTCTGGACCGCCTGGAT
TCAGTGGACATGCTGCTGCCCTCCAAGTGTCCGAGCTGGGAAGAGGACTACACCCCCGTCAGCGACAGCC
TCAACGACTCCAGCTGCATCAGCCAGATTTTTGGACAGGCCTCCCTGATCCCCCAGTTGTTTGGCCATGA
GCAGCAGGTACGGGAGGCAGAGCTGAGTGACCAGTATGAGGCGGCCTGCGAGTCAGCCTGCAGTGAAGCG
GAGTCCACAGCGGCAGAGACGCTTGACTTGCCACTGCCCAGCTACTTCCGCTCCCGCAGCCACAGCTACC
TGCGTGCCATCCAGGCAGGCTGCTCGCAGGAGGAGGACAGTGTCTCCCTGCAGTCCCTCTCCCCACCGCC
CAGTACCGGCAGCCTCAGCAATAGTCGCACGCTTCCGAGTTCATCATGCCTAGTGGCGTATAAGAAGACC
CCGCCACCGGTCCCTCCACGCACCACTTCAAAGCCGTTCATCTCAGTCACAGTCCAGAGCAGTACTGAGT
CTGCCCAGGACACCTACCTGGACAGCCAGGACCACAAGAGCGAGGTGACTAGCCAGTCGGGCCTGAGCAA
CTCGTCGGACAGCCTGGACAGCAGTACCCGACCGCCCAGCGTGACACGGGGTGGAGTCGCCCCAGCCCCT
GAGGCCCCAGAGCCACCCCCAAAACATGCAGCTCTGAAAAGTGAACAAGGGACGCTGACCAGCTCTGAGT
CCCACCCCGAGGCCGCCCCCAAAAGGAAACTGTCATCGATAGGAATACAAGAGAGGACTAGAAGGAACGG
TTCCCACCTCTCGGAGGACAACGGACCCAAAGCGATCGATGTGATGGCACCCTCCTCAGAAAGCAGCGTC
CCCTCTCACAGTATGTCCTCCCGACGGGACACAGACTCGGATACCCAGGATGCCAATGACTCAAGCTGTA
AGTCATCTGAGAGGAGCCTCCCGGACTGTACCCCTCACCCCAACTCCATCAGCATCGATGCCGGTCCCCG
GCAGGCCCCCAAGATTGCCCAGATCAAGCGCAACCTCTCCTATGGAGACAACAGCGACCCTGCCCTAGAG
GCGTCCTCGCTGCCCCCACCCGACCCCTGGCTCGAGACCTCCTCCAGCTCCCCAGCAGAGCCGGCACAGC
CAGGGGCCTGCCGCCGAGACGGCTACTGGTTCCTAAAGCTACTGCAGGCAGAAACAGAGCGGCTGGAAGG
CTGGTGCTGCCAGATGGACAAGGAGACCAAAGAGAACAACCTCTCTGAAGAAGTCTTAGGAAAAGTCCTC
AGTGCTGTGGGCAGTGCCCAGCTACTGATGTCCCAGAAATTCCAGCAGTTCCGGGGCCTCTGTGAGCAAA
ACTTGAACCCTGATGCCAACCCACGCCCCACAGCCCAGGACCTGGCAGGGTTCTGGGACCTGCTACAGCT
GTCCATCGAGGATATCAGCATGAAGTTCGATGAACTCTACCACCTCAAGGCCAACAGCTGGCAGCTGGTG
GAGACCCCCGAGAAGAGGAAGGAAGAGAAGAAACCACCCCCTCCGGTCCCAAAGAAGCCAGCCAAATCCA
AGCCGGCAGTGAGCCGCGACAAGGCCTCAGACGCCAGCGACAAGCAGCGCCAGGAGGCCCGCAAGAGACT
CCTGGCGGCCAAGCGGGCAGCTTCTGTGCGGCAGAACTCAGCCACCGAGAGCGCAGACAGCATCGAGATT
TATGTCCCGGAGGCCCAGACCAGGCTCTGA

Translation (989 aa):
MKGLGDSRPRHLSDSLDPPHEPLFAGTDRNPYLLSPTEAFAREARFPGQNTLPGDGLFPLNNQLPPPSST
FPRIHYNSHFEVPEESPFPSHAQATKINRLPANLLDQFEKQLPIHRDGFSTLQFPRGEAKARGESPGRIR
HLVHSVQRLFFTKAPSLEGTAGKVGGNGSKKGGMEDGKGRRAKSKERAKAGEPKRRSRSNISGWWSSDDN
LDGEAGAFRSSGPASGLMTLGRQAERSQPRYFMHAYNTISGHMLKTTKNNTTELTAPPPPPAPPATCPSL
GVGTDTNYVKRGSWSTLTLSHAHEVCQKTSATLDKSLLKSKSCHQGLAYHYLQVPGGGGEWSTTLLSPRE
TDAAAEGPIPCRRMRSGSYIKAMGDEDSDESGGSPKPSPKTAARRQSYLRATQQSLGEQSNPRRSLDRLD
SVDMLLPSKCPSWEEDYTPVSDSLNDSSCISQIFGQASLIPQLFGHEQQVREAELSDQYEAACESACSEA
ESTAAETLDLPLPSYFRSRSHSYLRAIQAGCSQEEDSVSLQSLSPPPSTGSLSNSRTLPSSSCLVAYKKT
PPPVPPRTTSKPFISVTVQSSTESAQDTYLDSQDHKSEVTSQSGLSNSSDSLDSSTRPPSVTRGGVAPAP
EAPEPPPKHAALKSEQGTLTSSESHPEAAPKRKLSSIGIQERTRRNGSHLSEDNGPKAIDVMAPSSESSV
PSHSMSSRRDTDSDTQDANDSSCKSSERSLPDCTPHPNSISIDAGPRQAPKIAQIKRNLSYGDNSDPALE
ASSLPPPDPWLETSSSSPAEPAQPGACRRDGYWFLKLLQAETERLEGWCCQMDKETKENNLSEEVLGKVL
SAVGSAQLLMSQKFQQFRGLCEQNLNPDANPRPTAQDLAGFWDLLQLSIEDISMKFDELYHLKANSWQLV
ETPEKRKEEKKPPPPVPKKPAKSKPAVSRDKASDASDKQRQEARKRLLAAKRAASVRQNSATESADSIEI
YVPEAQTRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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