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Report for CCDS13275.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13275.1 Public Homo sapiens 20 DLGAP4 24 110 108 CCDS HistoryNCBI Gene:22839Re-query CCDS DB by CCDS ID:13275.1Re-query CCDS DB by GeneID:22839See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13275.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340491.8 ENSP00000345700.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000340491.8Link to Ensembl Protein Viewer:ENSP00000345700.4Re-query CCDS DB by Nucleotide ID:ENST00000340491Re-query CCDS DB by Protein ID:ENSP00000345700
Original member Current member NCBI NM_183006.4 NP_892118.1 Accepted alive Link to Nucleotide Sequence:NM_183006.4Link to Protein Sequence:NP_892118.1Re-query CCDS DB by Nucleotide ID:NM_183006Re-query CCDS DB by Protein ID:NP_892118Link to BLAST:NP_892118.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_892118.1 453 Q9Y2H0-3 453 100% 0 0

Chromosomal Locations for CCDS 13275.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 36462569 36462599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36496705 36497066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36499588 36499676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36500199 36500611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36524250 36524341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36525851 36526006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 36526813 36527031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1362 nt):
ATGGCTTTGTGTCTGGAGCTCTTGAAGCAATGTTCATCATGCCTAGTGGCGTATAAGAAGACCCCGCCAC
CG
GTCCCTCCACGCACCACTTCAAAGCCGTTCATCTCAGTCACAGTCCAGAGCAGTACTGAGTCTGCCCA
G
GACACCTACCTGGACAGCCAGGACCACAAGAGCGAGGTGACTAGCCAGTCGGGCCTGAGCAACTCGTCG
GAC
AGCCTGGACAGCAGTACCCGACCGCCCAGCGTGACACGGGGTGGAGTCGCCCCAGCCCCTGAGGCCC
CA
GAGCCACCCCCAAAACATGCAGCTCTGAAAAGTGAACAAGGGACGCTGACCAGCTCTGAGTCCCACCC
C
GAGGCCGCCCCCAAAAGGAAACTGTCATCGATAGGAATACAAGTTGACTGCATTCAGCCAGTGCCAAAA
GAG
GAGCCCAGTCCCGCTACCAAATTCCAGTCCATCGGGGTTCAGGTAGAGGACGACTGGCGAAGCAGCG
TC
CCCTCTCACAGTATGTCCTCCCGACGGGACACAGACTCGGATACCCAGGATGCCAATGACTCAAGCTG
T
AAGTCATCTGAGAGGAGCCTCCCGGACTGTACCCCTCACCCCAACTCCATCAGCATCGATGCCGGTCCC
CGG
CAGGCCCCCAAGATTGCCCAGATCAAGCGCAACCTCTCCTATGGAGACAACAGCGACCCTGCCCTAG
AG
GCGTCCTCGCTGCCCCCACCCGACCCCTGGCTCGAGACCTCCTCCAGCTCCCCAGCAGAGCCGGCACA
G
CCAGGGGCCTGCCGCCGAGACGGCTACTGGTTCCTAAAGCTACTGCAGGCAGAAACAGAGCGGCTGGAA
GGC
TGGTGCTGCCAGATGGACAAGGAGACCAAAGAGAACAACCTCTCTGAAGAAGTCTTAGGAAAAGTCC
TC
AGTGCTGTGGGCAGTGCCCAGCTACTGATGTCCCAGAAATTCCAGCAGTTCCGGGGCCTCTGTGAGCA
A
AACTTGAACCCTGATGCCAACCCACGCCCCACAGCCCAGGACCTGGCAGGGTTCTGGGACCTGCTACAG
CTG
TCCATCGAGGATATCAGCATGAAGTTCGATGAACTCTACCACCTCAAGGCCAACAGCTGGCAGCTGG
TG
GAGACCCCCGAGAAGAGGAAGGAAGAGAAGAAACCACCCCCTCCGGTCCCAAAGAAGCCAGCCAAATC
C
AAGCCGGCAGTGAGCCGCGACAAGGCCTCAGACGCCAGCGACAAGCAGCGCCAGGAGGCCCGCAAGAGA
CTC
CTGGCGGCCAAGCGGGCAGCTTCTGTGCGGCAGAACTCAGCCACCGAGAGCGCAGACAGCATCGAGA
TT
TATGTCCCGGAGGCCCAGACCAGGCTCTGA


Translation (453 aa):
MALCLELLKQCSSCLVAYKKTPPPVPPRTTSKPFISVTVQSSTESAQDTYLDSQDHKSEVTSQSGLSNSS
D
SLDSSTRPPSVTRGGVAPAPEAPEPPPKHAALKSEQGTLTSSESHPEAAPKRKLSSIGIQ
VDCIQPVPK
E
EPSPATKFQSIGVQVEDDW
RSSVPSHSMSSRRDTDSDTQDANDSSCKSSERSLPDCTPHPNSISIDAGP
R
QAPKIAQIKRNLSYGDNSDPALEASSLPPPDPWLETSSSSPAEPAQPGACRRDGYWFLKLLQAETERLE
G
WCCQMDKETKENNLSEE
VLGKVLSAVGSAQLLMSQKFQQFRGLCEQNLNPDANPRPTAQDLAGFWDLLQ
L
SIEDISMKFDELYHLKANSWQLVETPEKRK
EEKKPPPPVPKKPAKSKPAVSRDKASDASDKQRQEARKR
L
LAAKRAASVRQNSATESADSIEIYVPEAQTRL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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