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Report for CCDS13342.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13342.1 Public Homo sapiens 20 KCNS1 24 110 108 CCDS HistoryNCBI Gene:3787Re-query CCDS DB by CCDS ID:13342.1Re-query CCDS DB by GeneID:3787See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13342.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000306117.5 ENSP00000307694.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000306117.5Link to Ensembl Protein Viewer:ENSP00000307694.1Re-query CCDS DB by Nucleotide ID:ENST00000306117Re-query CCDS DB by Protein ID:ENSP00000307694
Original member Current member EBI ENST00000537075.3 ENSP00000445595.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000537075.3Link to Ensembl Protein Viewer:ENSP00000445595.1Re-query CCDS DB by Nucleotide ID:ENST00000537075Re-query CCDS DB by Protein ID:ENSP00000445595
Original member Current member NCBI NM_001322799.2 NP_001309728.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001322799.2Link to Protein Sequence:NP_001309728.1Re-query CCDS DB by Nucleotide ID:NM_001322799Re-query CCDS DB by Protein ID:NP_001309728Link to BLAST:NP_001309728.1
Original member Current member NCBI NM_002251.5 NP_002242.2 Accepted alive Link to Nucleotide Sequence:NM_002251.5Link to Protein Sequence:NP_002242.2Re-query CCDS DB by Nucleotide ID:NM_002251Re-query CCDS DB by Protein ID:NP_002242Link to BLAST:NP_002242.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001309728.1 526 Q96KK3 526 100% 0 0
NP_002242.2 526 Q96KK3 526 100% 0 0

Chromosomal Locations for CCDS 13342.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 45094870 45095340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45097662 45098695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 45099161 45099236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1581 nt):
ATGCTGATGCTGCTGGTCCGGGGAACACACTATGAGAACCTCCGGTCTAAAGTGGTGCTGCCAACACCCC
TAGGAGGGAGGAGCACTGAAACCTTTGTGAGCGAGTTCCCGGGCCCCGACACCGGGATCCGCTGGCGGCG
AAGCGACGAGGCGCTGCGCGTGAACGTGGGTGGCGTGCGGCGGCAGCTGAGCGCGCGCGCCCTGGCGCGC
TTCCCGGGCACGCGGCTGGGCCGCCTGCAGGCCGCGGCGTCGGAGGAGCAGGCGCGGCGCCTGTGCGACG
ACTACGACGAGGCGGCGCGCGAATTCTACTTCGACCGGCACCCGGGCTTCTTCCTGAGCCTGCTGCACTT
CTACCGCACTGGCCACCTGCACGTGCTCGACGAGCTGTGCGTCTTCGCCTTTGGCCAGGAGGCCGACTAC
TGGGGCCTAGGCGAGAACGCGCTTGCCGCGTGCTGCCGCGCGCGCTACCTGGAGAGGCGGCTGACCCAGC
CGCACGCCTGGGACGAGGACAGCGACACGCCGAGCAGCGTGGACCCGTGCCCCGACGAGATCTCCGACGT
GCAGCGAGAACTGGCGCGCTATGGCGCGGCGCGCTGTGGCCGCCTGCGCCGCCGCCTCTGGCTGACCATG
GAGAACCCGGGCTACTCGCTGCCGAGCAAGCTCTTCAGCTGCGTCTCCATCAGCGTGGTGCTCGCCTCCA
TCGCCGCCATGTGCATCCACAGCCTGCCCGAGTACCAGGCCCGCGAGGCGGCGGCCGCCGTGGCTGCGGT
GGCCGCGGGCCGCAGCCCGGAAGGCGTGCGCGACGACCCGGTGCTGCGACGCCTCGAGTACTTCTGCATC
GCCTGGTTCAGCTTCGAGGTGTCGTCGCGCCTCCTGCTGGCGCCCAGTACGCGCAACTTCTTCTGCCACC
CGCTCAACCTCATCGACATTGTGTCTGTGCTGCCCTTCTATCTCACGCTGCTGGCTGGTGTGGCACTGGG
CGACCAGGGCGGCAAGGAGTTCGGCCACCTGGGCAAGGTGGTGCAGGTGTTCCGCCTCATGCGCATCTTC
CGCGTACTCAAGTTGGCGCGCCATTCCACCGGGCTGCGCTCGCTGGGAGCCACGCTCAAGCACAGCTACC
GTGAGGTGGGCATCTTGCTGCTGTACCTGGCTGTGGGTGTGTCAGTGTTCTCTGGTGTGGCCTACACAGC
TGAAAAGGAGGAGGACGTGGGCTTTAACACCATCCCAGCCTGCTGGTGGTGGGGCACAGTGAGCATGACC
ACCGTGGGCTATGGGGATGTGGTGCCAGTGACGGTGGCTGGCAAGCTGGCAGCCTCAGGCTGCATCCTAG
GGGGCATCCTGGTGGTAGCACTCCCCATCACCATCATCTTCAACAAGTTCTCCCACTTCTACCGGCGCCA
GAAGGCTCTGGAGGCAGCCGTGCGCAACAGCAACCACCAAGAGTTTGAGGACTTGCTGAGCAGCATTGAT
GGGGTGTCGGAGGCATCTCTGGAGACATCCCGAGAAACCTCTCAGGAGGGACAGTCTGCAGATCTAGAGA
GCCAGGCCCCCAGTGAGCCTCCACACCCTCAGATGTATTAA

Translation (526 aa):
MLMLLVRGTHYENLRSKVVLPTPLGGRSTETFVSEFPGPDTGIRWRRSDEALRVNVGGVRRQLSARALAR
FPGTRLGRLQAAASEEQARRLCDDYDEAAREFYFDRHPGFFLSLLHFYRTGHLHVLDELCVFAFGQEADY
WGLGENALAACCRARYLERRLTQPHAWDEDSDTPSSVDPCPDEISDVQRELARYGAARCGRLRRRLWLTM
ENPGYSLPSKLFSCVSISVVLASIAAMCIHSLPEYQAREAAAAVAAVAAGRSPEGVRDDPVLRRLEYFCI
AWFSFEVSSRLLLAPSTRNFFCHPLNLIDIVSVLPFYLTLLAGVALGDQGGKEFGHLGKVVQVFRLMRIF
RVLKLARHSTGLRSLGATLKHSYREVGILLLYLAVGVSVFSGVAYTAEKEEDVGFNTIPACWWWGTVSMT
TVGYGDVVPVTVAGKLAASGCILGGILVVALPITIIFNKFSHFYRRQKALEAAVRNSNHQEFEDLLSSID
GVSEASLETSRETSQEGQSADLESQAPSEPPHPQMY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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