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Report for CCDS134.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
134.1 Public Homo sapiens 1 MAD2L2 24 110 108 CCDS HistoryNCBI Gene:10459Re-query CCDS DB by CCDS ID:134.1Re-query CCDS DB by GeneID:10459See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 134.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000235310.7 ENSP00000235310.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000235310.7Link to Ensembl Protein Viewer:ENSP00000235310.2Re-query CCDS DB by Nucleotide ID:ENST00000235310Re-query CCDS DB by Protein ID:ENSP00000235310
Original member Current member EBI ENST00000376667.7 ENSP00000365855.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000376667.7Link to Ensembl Protein Viewer:ENSP00000365855.3Re-query CCDS DB by Nucleotide ID:ENST00000376667Re-query CCDS DB by Protein ID:ENSP00000365855
Original member Current member EBI ENST00000376692.9 ENSP00000365882.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000376692.9Link to Ensembl Protein Viewer:ENSP00000365882.4Re-query CCDS DB by Nucleotide ID:ENST00000376692Re-query CCDS DB by Protein ID:ENSP00000365882
Original member Current member EBI ENST00000456915.2 ENSP00000400982.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000456915.2Link to Ensembl Protein Viewer:ENSP00000400982.2Re-query CCDS DB by Nucleotide ID:ENST00000456915Re-query CCDS DB by Protein ID:ENSP00000400982
Original member Current member NCBI NM_001127325.2 NP_001120797.1 Accepted alive Link to Nucleotide Sequence:NM_001127325.2Link to Protein Sequence:NP_001120797.1Re-query CCDS DB by Nucleotide ID:NM_001127325Re-query CCDS DB by Protein ID:NP_001120797Link to BLAST:NP_001120797.1
Original member Current member NCBI NM_006341.4 NP_006332.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006341.4Link to Protein Sequence:NP_006332.3Re-query CCDS DB by Nucleotide ID:NM_006341Re-query CCDS DB by Protein ID:NP_006332Link to BLAST:NP_006332.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001120797.1 211 Q9UI95 211 100% 0 0
NP_006332.3 211 Q9UI95 211 100% 0 0

Chromosomal Locations for CCDS 134.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 11674775 11674816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11675082 11675174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11675658 11675731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11676046 11676140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11676848 11676948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11677543 11677614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11680353 11680471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11680562 11680601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (636 nt):
ATGACCACGCTCACACGACAAGACCTCAACTTTGGCCAAGTGGTGGCCGATGTGCTCTGCGAGTTCCTGG
AGGTGGCTGTGCATCTCATCCTCTACGTGCGCGAGGTCTACCCCGTGGGCATCTTCCAGAAACGCAAGAA
GTACAACGTGCCGGTCCAGATGTCCTGCCACCCGGAGCTGAATCAGTATATCCAGGACACGCTGCACTGC
GTCAAGCCACTCCTGGAGAAGAATGATGTGGAGAAAGTGGTGGTGGTGATTTTGGATAAAGAGCACCGCC
CAGTGGAGAAATTCGTCTTTGAGATCACCCAGCCTCCACTGCTGTCCATCAGCTCAGACTCGCTGTTGTC
TCATGTGGAGCAGCTGCTCCGGGCCTTCATCCTGAAGATCAGCGTGTGCGATGCCGTCCTGGACCACAAC
CCCCCAGGCTGTACCTTCACAGTCCTGGTGCACACGAGAGAAGCCGCCACTCGCAACATGGAGAAGATCC
AGGTCATCAAGGATTTCCCCTGGATCCTGGCGGATGAGCAGGATGTCCACATGCATGACCCCCGGCTGAT
ACCACTAAAAACCATGACGTCGGACATTTTAAAGATGCAGCTTTACGTGGAAGAGCGCGCTCATAAAGGC
AGCTGA

Translation (211 aa):
MTTLTRQDLNFGQVVADVLCEFLEVAVHLILYVREVYPVGIFQKRKKYNVPVQMSCHPELNQYIQDTLHC
VKPLLEKNDVEKVVVVILDKEHRPVEKFVFEITQPPLLSISSDSLLSHVEQLLRAFILKISVCDAVLDHN
PPGCTFTVLVHTREAATRNMEKIQVIKDFPWILADEQDVHMHDPRLIPLKTMTSDILKMQLYVEERAHKG
S


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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