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Report for CCDS13486.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13486.1 Public Homo sapiens 20 CDH26 24 110 108 CCDS HistoryNCBI Gene:60437Re-query CCDS DB by CCDS ID:13486.1Re-query CCDS DB by GeneID:60437See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13486.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000350849.10 ENSP00000310845.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000350849.10Link to Ensembl Protein Viewer:ENSP00000310845.7Re-query CCDS DB by Nucleotide ID:ENST00000350849Re-query CCDS DB by Protein ID:ENSP00000310845
Original member Current member NCBI NM_021810.6 NP_068582.2 Accepted alive Link to Nucleotide Sequence:NM_021810.6Link to Protein Sequence:NP_068582.2Re-query CCDS DB by Nucleotide ID:NM_021810Re-query CCDS DB by Protein ID:NP_068582Link to BLAST:NP_068582.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068582.2 165 Q8IXH8-2 165 100% 0 0

Chromosomal Locations for CCDS 13486.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 59996571 59996588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 59999586 59999663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 60001343 60001411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 60002813 60002866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 60006713 60006787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 60012527 60012730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (498 nt):
ATGAAACCTCTGATATGGACATGGTCAGATGTTGAAGGCCAGAGGCCGGCTCTGCTCATCTGCACAGCTG
CAGCAGGACCCACGCAGGGAGTTAAGGATCTCGAGGAAGTGCCTCCATCTGCAGCGAGTCAGTCAGCCCA
AGCACGCTGTGCTCTGGGGAGCTGGGGTTATGGCAAGCCCTTTGAGCCAAGAAGTGTGAAAAACATACAC
TCTACTCCTGCTTACCCAGATGCCACAATGCACAGACAACTCCTGGCTCCGGTGGAAGGAAGGATGGCAG
AGACATTGAATCAGAAACTCCATGTTGCCAATGTGCTGGAAGATGACCCCGGCTACCTACCTCACGTCTA
CAGCGAGGAAGGGGAGTGTGGAGGGGCCCCATCCCTCAGCTCTCTGGCCAGCTTGGAACAGGAGTTGCAA
CCTGATTTGCTGGACTCTTTGGGTTCAAAAGCGACTCCGTTTGAGGAAATATATTCAGAGTCAGGTGTTC
CTTCCTAA

Translation (165 aa):
MKPLIWTWSDVEGQRPALLICTAAAGPTQGVKDLEEVPPSAASQSAQARCALGSWGYGKPFEPRSVKNIH
STPAYPDATMHRQLLAPVEGRMAETLNQKLHVANVLEDDPGYLPHVYSEEGECGGAPSLSSLASLEQELQ
PDLLDSLGSKATPFEEIYSESGVPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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