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Report for CCDS13552.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13552.1 Public Homo sapiens 20 SOX18 24 110 108 CCDS HistoryNCBI Gene:54345Re-query CCDS DB by CCDS ID:13552.1Re-query CCDS DB by GeneID:54345See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13552.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340356.9 ENSP00000341815.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000340356.9Link to Ensembl Protein Viewer:ENSP00000341815.7Re-query CCDS DB by Nucleotide ID:ENST00000340356Re-query CCDS DB by Protein ID:ENSP00000341815
Original member Current member NCBI NM_018419.3 NP_060889.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018419.3Link to Protein Sequence:NP_060889.1Re-query CCDS DB by Nucleotide ID:NM_018419Re-query CCDS DB by Protein ID:NP_060889Link to BLAST:NP_060889.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060889.1 384 P35713 384 100% 0 0

Chromosomal Locations for CCDS 13552.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 64048166 64048962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 64049159 64049516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1155 nt):
ATGCAGAGATCGCCGCCCGGCTACGGCGCACAGGACGACCCGCCCGCCCGCCGCGACTGTGCATGGGCCC
CGGGACACGGGGCCGCCGCTGACACGCGCGGCCTCGCCGCCGGCCCCGCCGCCCTCGCCGCGCCCGCCGC
GCCCGCCTCGCCGCCCAGCCCGCAGCGCAGTCCCCCGCGCAGCCCCGAGCCGGGGCGCTATGGCCTCAGC
CCGGCCGGCCGCGGGGAACGCCAGGCGGCAGACGAGTCGCGCATCCGGCGGCCCATGAACGCCTTCATGG
TGTGGGCAAAGGACGAGCGCAAGCGGCTGGCTCAGCAGAACCCGGACCTGCACAACGCGGTGCTCAGCAA
GATGCTGGGCAAAGCGTGGAAGGAGCTGAACGCGGCGGAGAAGCGGCCCTTCGTGGAGGAAGCCGAACGG
CTGCGCGTGCAGCACTTGCGCGACCACCCCAACTACAAGTACCGGCCGCGCCGCAAGAAGCAGGCGCGCA
AGGCCCGGCGGCTGGAGCCCGGCCTCCTGCTCCCGGGATTAGCGCCCCCGCAGCCACCGCCCGAGCCTTT
CCCCGCGGCGTCTGGCTCGGCTCGCGCCTTCCGCGAGCTGCCCCCGCTGGGCGCCGAGTTCGACGGCCTG
GGGCTGCCCACGCCCGAGCGCTCGCCTCTGGACGGCCTGGAGCCCGGCGAGGCTGCCTTCTTCCCACCGC
CCGCGGCGCCCGAGGACTGCGCGCTGCGGCCCTTCCGCGCGCCCTACGCGCCCACCGAGTTGTCGCGGGA
CCCCGGCGGTTGCTACGGGGCTCCCCTGGCGGAGGCGCTCAGGACCGCGCCCCCCGCGGCGCCGCTCGCT
GGCCTGTACTACGGCACCCTGGGCACGCCCGGCCCGTACCCCGGCCCGCTGTCGCCGCCGCCCGAGGCCC
CGCCGCTGGAGAGCGCCGAGCCGCTGGGGCCCGCCGCCGATCTGTGGGCCGACGTGGACCTCACCGAGTT
CGACCAGTACCTCAACTGCAGCCGGACTCGGCCCGACGCCCCCGGGCTCCCGTACCACGTGGCACTGGCC
AAACTGGGCCCGCGCGCCATGTCCTGCCCAGAGGAGAGCAGCCTGATCTCCGCGCTGTCGGACGCCAGCA
GCGCGGTCTATTACAGCGCGTGCATCTCCGGCTAG

Translation (384 aa):
MQRSPPGYGAQDDPPARRDCAWAPGHGAAADTRGLAAGPAALAAPAAPASPPSPQRSPPRSPEPGRYGLS
PAGRGERQAADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWKELNAAEKRPFVEEAER
LRVQHLRDHPNYKYRPRRKKQARKARRLEPGLLLPGLAPPQPPPEPFPAASGSARAFRELPPLGAEFDGL
GLPTPERSPLDGLEPGEAAFFPPPAAPEDCALRPFRAPYAPTELSRDPGGCYGAPLAEALRTAPPAAPLA
GLYYGTLGTPGPYPGPLSPPPEAPPLESAEPLGPAADLWADVDLTEFDQYLNCSRTRPDAPGLPYHVALA
KLGPRAMSCPEESSLISALSDASSAVYYSACISG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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