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Report for CCDS13890.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13890.1 Public Homo sapiens 22 RNF185 24 110 108 CCDS HistoryNCBI Gene:91445Re-query CCDS DB by CCDS ID:13890.1Re-query CCDS DB by GeneID:91445See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13890.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000326132.11 ENSP00000320508.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000326132.11Link to Ensembl Protein Viewer:ENSP00000320508.5Re-query CCDS DB by Nucleotide ID:ENST00000326132Re-query CCDS DB by Protein ID:ENSP00000320508
Original member Current member EBI ENST00000518626.5 ENSP00000427755.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000518626.5Link to Ensembl Protein Viewer:ENSP00000427755.1Re-query CCDS DB by Nucleotide ID:ENST00000518626Re-query CCDS DB by Protein ID:ENSP00000427755
Original member Current member NCBI NM_152267.4 NP_689480.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152267.4Link to Protein Sequence:NP_689480.2Re-query CCDS DB by Nucleotide ID:NM_152267Re-query CCDS DB by Protein ID:NP_689480Link to BLAST:NP_689480.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689480.2 192 Q96GF1-1 192 100% 0 0

Chromosomal Locations for CCDS 13890.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 31187095 31187270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31192684 31192702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31195469 31195581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31196936 31196990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31201498 31201615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 31204489 31204586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (579 nt):
ATGGCAAGCAAGGGGCCCTCGGCCTCTGCATCTCCTGAGAACTCCAGTGCAGGGGGGCCCAGTGGGAGCA
GCAATGGCGCTGGCGAGAGCGGAGGGCAGGACAGCACTTTCGAGTGCAACATCTGCTTGGACACAGCCAA
GGATGCCGTCATCAGCCTGTGTGGCCACCTCTTCTGTTGGCCGTGTTTACATCAGTGGTTGGAGACCAGA
CCTAACAGACAGGTGTGTCCTGTTTGCAAAGCTGGCATCAGCCGAGACAAGGTCATCCCCCTCTATGGAA
GGGGCAGCACTGGGCAACAGGACCCCAGAGAGAAGACCCCTCCTCGTCCTCAAGGACAGAGGCCAGAGCC
GGAGAATAGAGGGGGATTTCAAGGATTTGGATTTGGAGATGGTGGCTTCCAGATGTCTTTTGGAATTGGG
GCATTTCCCTTTGGGATATTTGCCACAGCATTTAATATAAATGATGGGCGGCCTCCTCCAGCTGTCCCTG
GGACACCCCAGTATGTGGACGAGCAGTTCCTGTCACGCCTCTTCCTATTTGTGGCCCTGGTGATCATGTT
CTGGCTCCTGATTGCCTAA

Translation (192 aa):
MASKGPSASASPENSSAGGPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETR
PNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKTPPRPQGQRPEPENRGGFQGFGFGDGGFQMSFGIG
AFPFGIFATAFNINDGRPPPAVPGTPQYVDEQFLSRLFLFVALVIMFWLLIA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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